RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 OTUB2Q96DC9 234 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 PAIP1Q9H074 479 aaKnown RBP10.3□□□□□ -0.76
CUX1-221ENST00000622516 NTN4Q9HB63 628 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 MAGEL2Q9UJ55 1249 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 PLAGL1Q9UM63 463 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 BTBD3Q9Y2F9 522 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 GON4LQ3T8J9 2241 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 ELOVL7A1L3X0 281 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 DYTNA2CJ06 578 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 H3BM21 787 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 YY2O15391 372 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 CPSF4O95639 269 aaKnown RBP10.29□□□□□ -0.76
CUX1-221ENST00000622516 C6P13671 934 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 JUPP14923 745 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 PBX2P40425 430 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 MTHFRP42898 656 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 GPR1P46091 355 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 RPL5P46777 297 aaKnown RBP10.29□□□□□ -0.76
CUX1-221ENST00000622516 YAP1P46937 504 aaKnown RBP10.29□□□□□ -0.76
CUX1-221ENST00000622516 AP1S2P56377 157 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 DCDC1P59894 354 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 NFE2L1Q14494 772 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 ZNF234Q14588 700 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 RUNDC3AQ59EK9 446 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 IER5LQ5T953 404 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 TMPRSS11BQ86T26 416 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 SYT12Q8IV01 421 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 PLPP6Q8IY26 295 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 TBC1D21Q8IYX1 336 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 CLECL1Q8IZS7 167 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 TCAIMQ8N3R3 496 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 PLA2G15Q8NCC3 412 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 GLB1L3Q8NCI6 653 aaPredicted RBP10.29□□□□□ -0.76
CUX1-221ENST00000622516 TSPAN14Q8NG11 270 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 OR8J3Q8NGG0 315 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 ZFP28Q8NHY6 868 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 NEIL2Q969S2 332 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 C9orf16Q9BUW7 83 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 REXO4Q9GZR2 422 aaKnown RBP10.29□□□□□ -0.76
CUX1-221ENST00000622516 ZNF696Q9H7X3 374 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 SGK2Q9HBY8 427 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 KLHL42Q9P2K6 505 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 VPS4AQ9UN37 437 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 CFAP20Q9Y6A4 193 aaKnown RBP10.29□□□□□ -0.76
CUX1-221ENST00000622516 SLC5A10A0PJK1 596 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 H3BSA7 217 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 CXCR6O00574 342 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 KPNA5O15131 536 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 CLOCKO15516 846 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 NOBOXO60393 691 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 PSIP1O75475 530 aaKnown RBP10.29□□□□□ -0.76
CUX1-221ENST00000622516 H6PDO95479 791 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 PRKACGP22612 351 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 HOXA9P31269 272 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 C16orf72Q14CZ0 275 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 LAPTM4AQ15012 233 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 LDLRAP1Q5SW96 308 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 INTS11Q5TA45 600 aaKnown RBP10.29□□□□□ -0.76
CUX1-221ENST00000622516 ZNF621Q6ZSS3 439 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 STK32CQ86UX6 486 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 GPR180Q86V85 440 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 RIMKLAQ8IXN7 391 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 ETFBKMTQ8IXQ9 262 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 TRIML2Q8N7C3 387 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 ZNF557Q8N988 423 aaPredicted RBP10.29□□□□□ -0.76
CUX1-221ENST00000622516 HERVK_113Q902F9 699 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 TMBIM1Q969X1 311 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 DTD2Q96FN9 168 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 IL17FQ96PD4 163 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 DPH2Q9BQC3 489 aaPredicted RBP10.29□□□□□ -0.76
CUX1-221ENST00000622516 ACAT2Q9BWD1 397 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 ANKRD60Q9BZ19 345 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 KAT8Q9H7Z6 458 aaKnown RBP10.29□□□□□ -0.76
CUX1-221ENST00000622516 BRWD1Q9NSI6 2320 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 CXorf51AA0A1B0GTR3 108 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 TSPAN11A1L157 253 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 RFXANKO14593 260 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 NPC1O15118 1278 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 EPHX1P07099 455 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 SRPRAP08240 638 aaKnown RBP10.29□□□□□ -0.76
CUX1-221ENST00000622516 CDH1P12830 882 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 RPS9P46781 194 aaKnown RBP10.29□□□□□ -0.76
CUX1-221ENST00000622516 PRLHRP49683 370 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 CHRNB3Q05901 458 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 GAB4Q2WGN9 574 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 TMTC4Q5T4D3 741 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 TANGO2Q6ICL3 276 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 FAM180BQ6P0A1 224 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 ZNF547Q8IVP9 402 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 ZNF480Q8WV37 535 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 FBXL8Q96CD0 374 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 CMTM7Q96FZ5 175 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 RMND5BQ96G75 393 aaPredicted RBP10.29□□□□□ -0.76
CUX1-221ENST00000622516 HIC2Q96JB3 615 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 ASB16Q96NS5 453 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 FAM129BQ96TA1 746 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 SMURF2Q9HAU4 748 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 TM7SF3Q9NS93 570 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 ATXN10Q9UBB4 475 aa10.29□□□□□ -0.76
CUX1-221ENST00000622516 VPS29Q9UBQ0 182 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms