RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 IRAK4Q9NWZ3 460 aa16.18■□□□□ 0.18
TRIM28-215ENST00000601150 ANKMY1Q9P2S6 941 aa16.18■□□□□ 0.18
TRIM28-215ENST00000601150 IL17BQ9UHF5 180 aa16.18■□□□□ 0.18
TRIM28-215ENST00000601150 FAM208BQ5VWN6 2430 aa16.18■□□□□ 0.18
TRIM28-215ENST00000601150 OR2A25A4D2G3 310 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 C21orf140B9A014 251 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 MEN1O00255 615 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 TERTO14746 1132 aaKnown RBP16.17■□□□□ 0.18
TRIM28-215ENST00000601150 ZSCAN9O15535 394 aaPredicted RBP16.17■□□□□ 0.18
TRIM28-215ENST00000601150 STMN1P16949 149 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 TCN2P20062 427 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 ECHS1P30084 290 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 RORAP35398 523 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 YBX1P67809 324 aaKnown RBP16.17■□□□□ 0.18
TRIM28-215ENST00000601150 ABATP80404 500 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 RHDQ02161 417 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 DNASE1L3Q13609 305 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 EFTUD2Q15029 972 aaKnown RBP eCLIP16.17■□□□□ 0.181e-27■■■■■ 82.8
TRIM28-215ENST00000601150 AGTRAPQ6RW13 159 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 MBOAT1Q6ZNC8 495 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 DSELQ8IZU8 1212 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 MR1Q95460 341 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 PCBD2Q9H0N5 130 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 CDC42EP4Q9H3Q1 356 aaKnown RBP16.17■□□□□ 0.18
TRIM28-215ENST00000601150 CAB39LQ9H9S4 337 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 PCMTD2Q9NV79 361 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 ARL15Q9NXU5 204 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 UTP6Q9NYH9 597 aaKnown RBP16.17■□□□□ 0.18
TRIM28-215ENST00000601150 KCND3Q9UK17 655 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 IKZF3Q9UKT9 509 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 NOVA2Q9UNW9 492 aaKnown RBP16.17■□□□□ 0.18
TRIM28-215ENST00000601150 SRPK3Q9UPE1 567 aa16.17■□□□□ 0.18
TRIM28-215ENST00000601150 MDC1Q14676 2089 aaKnown RBP16.17■□□□□ 0.18
TRIM28-215ENST00000601150 FER1L5A0AVI2 2057 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 CDC7O00311 574 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 CTSVO60911 334 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 KATNA1O75449 491 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 FAM155BO75949 473 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 CTSBP07858 339 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 RHOXF2BP0C7M4 288 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 F8A1P23610 371 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 CCND1P24385 295 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 TBPL1P62380 186 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 MC1RQ01726 317 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 TCTE1Q5JU00 501 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 PRAMEF13Q5VWM6 474 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 FAM199XQ6PEV8 388 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-215ENST00000601150 SBSNQ6UWP8 590 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 ZNF517Q6ZMY9 492 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-215ENST00000601150 RNF44Q7L0R7 432 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 ZNF655Q8N720 491 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-215ENST00000601150 ANKRD49Q8WVL7 239 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 ATL1Q8WXF7 558 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 STARD8Q92502 1023 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 MED8Q96G25 268 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 UBL7Q96S82 380 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-215ENST00000601150 CYTH2Q99418 400 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 DPH2Q9BQC3 489 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-215ENST00000601150 SELENOSQ9BQE4 189 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 RHOXF2Q9BQY4 288 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 PLCD4Q9BRC7 762 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 NDC1Q9BTX1 674 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 GPR87Q9BY21 358 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 CHST8Q9H2A9 424 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 AKIRIN1Q9H9L7 192 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-215ENST00000601150 L2HGDHQ9H9P8 463 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 RALYQ9UKM9 306 aaKnown RBP16.16■□□□□ 0.18
TRIM28-215ENST00000601150 SNX7Q9UNH6 387 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 PCDHGA6Q9Y5G7 932 aa16.16■□□□□ 0.18
TRIM28-215ENST00000601150 ZFYVE26Q68DK2 2539 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 IGKV1-8A0A0C4DH67 115 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 NPEPPSL1A6NEC2 478 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 PHGDHO43175 533 aaKnown RBP16.15■□□□□ 0.18
TRIM28-215ENST00000601150 NRP2O60462 931 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 SRPX2O60687 465 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-215ENST00000601150 WISP3O95389 354 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-215ENST00000601150 RAB10P61026 200 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 RPS15P62841 145 aaKnown RBP16.15■□□□□ 0.18
TRIM28-215ENST00000601150 CYP4F2P78329 520 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 NAE1Q13564 534 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 ZKSCAN8Q15776 578 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-215ENST00000601150 PPP1R3AQ16821 1122 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 ZNF425Q6IV72 752 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 RHBDD2Q6NTF9 364 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 IGSF10Q6WRI0 2623 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 ADAMTSL2Q86TH1 951 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 PAQR7Q86WK9 346 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 FBXL8Q96CD0 374 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 ZNF285Q96NJ3 590 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 ZFYVE21Q9BQ24 234 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 SGPP1Q9BX95 441 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 FAM117AQ9C073 453 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 DERL2Q9GZP9 239 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 ATG10Q9H0Y0 220 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 ACSS3Q9H6R3 686 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 ENAMQ9NRM1 1142 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 TXLNGQ9NUQ3 528 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 CTNNAL1Q9UBT7 734 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 NFU1Q9UMS0 254 aa16.15■□□□□ 0.18
TRIM28-215ENST00000601150 MRPS18BQ9Y676 258 aaKnown RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms