RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 FMO2Q99518 471 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 GPR22Q99680 433 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 HIST1H2AJQ99878 128 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 H2AFJQ9BTM1 129 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 DPH7Q9BTV6 452 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 TSPYL1Q9H0U9 437 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 CAB39LQ9H9S4 337 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 POPDC3Q9HBV1 291 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 PCMTD2Q9NV79 361 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 NINJ2Q9NZG7 142 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 IKZF3Q9UKT9 509 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 MRPS18BQ9Y676 258 aaKnown RBP13.3□□□□□ -0.28
UPF1-205ENST00000598209 AP1M2Q9Y6Q5 423 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 MGAQ8IWI9 3026 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 OR2A25A4D2G3 310 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 C21orf140B9A014 251 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 ZSCAN9O15535 394 aaPredicted RBP13.29□□□□□ -0.28
UPF1-205ENST00000598209 NRP2O60462 931 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 CTSVO60911 334 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 KATNA1O75449 491 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 FAM155BO75949 473 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 ECHS1P30084 290 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 SPRP35270 261 aaPredicted RBP13.29□□□□□ -0.28
UPF1-205ENST00000598209 PRDX1Q06830 199 aaKnown RBP13.29□□□□□ -0.28
UPF1-205ENST00000598209 NAB1Q13506 487 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 USP10Q14694 798 aaKnown RBP13.29□□□□□ -0.28
UPF1-205ENST00000598209 GRTP1Q5TC63 336 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 AGTRAPQ6RW13 159 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 SBSNQ6UWP8 590 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 ZNF517Q6ZMY9 492 aaPredicted RBP13.29□□□□□ -0.28
UPF1-205ENST00000598209 RNF44Q7L0R7 432 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 RELL1Q8IUW5 271 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 ANKRD49Q8WVL7 239 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 TSPAN17Q96FV3 270 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 UBL7Q96S82 380 aaPredicted RBP13.29□□□□□ -0.28
UPF1-205ENST00000598209 SELENOSQ9BQE4 189 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 PLCD4Q9BRC7 762 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 TRIM54Q9BYV2 358 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 CHST8Q9H2A9 424 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 GPAMQ9HCL2 828 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 CCDC177Q9NQR7 707 aaPredicted RBP13.29□□□□□ -0.28
UPF1-205ENST00000598209 ARL15Q9NXU5 204 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 ANKMY1Q9P2S6 941 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 KCND3Q9UK17 655 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 SRPK3Q9UPE1 567 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 NBEAQ8NFP9 2946 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 ZFYVE26Q68DK2 2539 aa13.29□□□□□ -0.28
UPF1-205ENST00000598209 LOC400499M0QZD8 3231 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 IGKV1-8A0A0C4DH67 115 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 A0A0J9YVX5 310 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 NPEPPSL1A6NEC2 478 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 CDC7O00311 574 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 NKX2-8O15522 239 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 PHGDHO43175 533 aaKnown RBP13.28□□□□□ -0.28
UPF1-205ENST00000598209 WISP3O95389 354 aaPredicted RBP13.28□□□□□ -0.28
UPF1-205ENST00000598209 ENO2P09104 434 aaPredicted RBP13.28□□□□□ -0.28
UPF1-205ENST00000598209 PHBP35232 272 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 AP1S2P56377 157 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 TBPL1P62380 186 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 ABATP80404 500 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 MC1RQ01726 317 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 NAE1Q13564 534 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 COL9A2Q14055 689 aaPredicted RBP13.28□□□□□ -0.28
UPF1-205ENST00000598209 PTCHD3Q3KNS1 767 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 UBAP2Q5T6F2 1119 aaKnown RBP13.28□□□□□ -0.28
UPF1-205ENST00000598209 PRAMEF13Q5VWM6 474 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 LCN10Q6JVE6 187 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 RHBDD2Q6NTF9 364 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 PAQR7Q86WK9 346 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 LRRN4CLQ8ND94 238 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 ANKRD7Q92527 254 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 TTC9Q92623 222 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 ALKBH8Q96BT7 664 aaKnown RBP13.28□□□□□ -0.28
UPF1-205ENST00000598209 MED8Q96G25 268 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 RUFY1Q96T51 708 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 ATG10Q9H0Y0 220 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 CDC42EP4Q9H3Q1 356 aaKnown RBP13.28□□□□□ -0.28
UPF1-205ENST00000598209 NOVA2Q9UNW9 492 aaKnown RBP13.28□□□□□ -0.28
UPF1-205ENST00000598209 PCDHGA6Q9Y5G7 932 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 CHD6Q8TD26 2715 aa13.28□□□□□ -0.28
UPF1-205ENST00000598209 ERVH48-1M5A8F1 160 aa13.27□□□□□ -0.29
UPF1-205ENST00000598209 ACSL3O95573 720 aa13.27□□□□□ -0.29
UPF1-205ENST00000598209 GUCA1CO95843 209 aa13.27□□□□□ -0.29
UPF1-205ENST00000598209 RHOXF2BP0C7M4 288 aa13.27□□□□□ -0.29
UPF1-205ENST00000598209 PRKAR1AP10644 381 aa13.27□□□□□ -0.29
UPF1-205ENST00000598209 STMN1P16949 149 aa13.27□□□□□ -0.29
UPF1-205ENST00000598209 AGXTP21549 392 aa13.27□□□□□ -0.29
UPF1-205ENST00000598209 VSX2P58304 361 aaPredicted RBP13.27□□□□□ -0.29
UPF1-205ENST00000598209 RPS15P62841 145 aaKnown RBP13.27□□□□□ -0.29
UPF1-205ENST00000598209 CDC20Q12834 499 aa13.27□□□□□ -0.29
UPF1-205ENST00000598209 PPP1R3AQ16821 1122 aa13.27□□□□□ -0.29
UPF1-205ENST00000598209 TCTE1Q5JU00 501 aa13.27□□□□□ -0.29
UPF1-205ENST00000598209 C1orf189Q5VU69 101 aa13.27□□□□□ -0.29
UPF1-205ENST00000598209 ZNF385CQ66K41 422 aaPredicted RBP13.27□□□□□ -0.29
UPF1-205ENST00000598209 FRMPD2BQ6IN97 320 aa13.27□□□□□ -0.29
UPF1-205ENST00000598209 ZNF425Q6IV72 752 aa13.27□□□□□ -0.29
UPF1-205ENST00000598209 C16orf46Q6P387 395 aa13.27□□□□□ -0.29
UPF1-205ENST00000598209 FBXO42Q6P3S6 717 aa13.27□□□□□ -0.29
UPF1-205ENST00000598209 FAM198BQ6UWH4 519 aa13.27□□□□□ -0.29
UPF1-205ENST00000598209 IFT20Q8IY31 132 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms