RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 RORAP35398 523 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 DLSTP36957 453 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 RAB10P61026 200 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 PRDX1Q06830 199 aaKnown RBP13.98□□□□□ -0.17
VRK3-206ENST00000594090 SLMAPQ14BN4 828 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 PPP1R3AQ16821 1122 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 ZC3H12BQ5HYM0 836 aaKnown RBP13.98□□□□□ -0.17
VRK3-206ENST00000594090 THEMIS2Q5TEJ8 643 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 AGTRAPQ6RW13 159 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 RNF44Q7L0R7 432 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 MCATQ8IVS2 390 aaKnown RBP13.98□□□□□ -0.17
VRK3-206ENST00000594090 DSELQ8IZU8 1212 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 CLIP3Q96DZ5 547 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 SLC45A3Q96JT2 553 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 HIST1H2AHQ96KK5 128 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 LRFN5Q96NI6 719 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 CYTH2Q99418 400 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 HIST1H2AJQ99878 128 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 H2AFJQ9BTM1 129 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 EFHD1Q9BUP0 239 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 TRIM54Q9BYV2 358 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 DERL2Q9GZP9 239 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 SPRTNQ9H040 489 aaPredicted RBP13.98□□□□□ -0.17
VRK3-206ENST00000594090 ACSS3Q9H6R3 686 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 AKIRIN1Q9H9L7 192 aaPredicted RBP13.98□□□□□ -0.17
VRK3-206ENST00000594090 IRAK4Q9NWZ3 460 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 ARL15Q9NXU5 204 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 ANKMY1Q9P2S6 941 aa13.98□□□□□ -0.17
VRK3-206ENST00000594090 NOVA2Q9UNW9 492 aaKnown RBP13.98□□□□□ -0.17
VRK3-206ENST00000594090 PTPRQQ9UMZ3 2332 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 DSPP15924 2871 aaKnown RBP13.97□□□□□ -0.17
VRK3-206ENST00000594090 CDC7O00311 574 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 TERTO14746 1132 aaKnown RBP13.97□□□□□ -0.17
VRK3-206ENST00000594090 ZNF500O60304 480 aaPredicted RBP13.97□□□□□ -0.17
VRK3-206ENST00000594090 HBQ1P09105 142 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 F8A1P23610 371 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 ABATP80404 500 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 PRAMEF13Q5VWM6 474 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 ZNF425Q6IV72 752 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 TLDC1Q6P9B6 456 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 ZNF517Q6ZMY9 492 aaPredicted RBP13.97□□□□□ -0.17
VRK3-206ENST00000594090 ZSCAN1Q8NBB4 408 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 CT55Q8WUE5 264 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 FBXL8Q96CD0 374 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 MRRFQ96E11 262 aaKnown RBP13.97□□□□□ -0.17
VRK3-206ENST00000594090 MED8Q96G25 268 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 SELENOSQ9BQE4 189 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 PLCD4Q9BRC7 762 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 SLC7A5P2Q9GIP4 190 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 PCBD2Q9H0N5 130 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 ATG10Q9H0Y0 220 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 PCMTD2Q9NV79 361 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 IL17BQ9UHF5 180 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 OARD1Q9Y530 152 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 AP1M2Q9Y6Q5 423 aa13.97□□□□□ -0.17
VRK3-206ENST00000594090 PCM1Q15154 2024 aa13.96□□□□□ -0.17
VRK3-206ENST00000594090 C21orf140B9A014 251 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 MEN1O00255 615 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 GUCA1CO95843 209 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 KLK3P07288 261 aaPredicted RBP13.96□□□□□ -0.18
VRK3-206ENST00000594090 CCDC166P0CW27 439 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 TCN2P20062 427 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 NAE1Q13564 534 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 TSNQ15631 228 aaKnown RBP13.96□□□□□ -0.18
VRK3-206ENST00000594090 UAP1Q16222 522 aaPredicted RBP13.96□□□□□ -0.18
VRK3-206ENST00000594090 TEX35Q5T0J7 233 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 FRMPD2BQ6IN97 320 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 RHBDD2Q6NTF9 364 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 FAM199XQ6PEV8 388 aaPredicted RBP13.96□□□□□ -0.18
VRK3-206ENST00000594090 CMC1Q7Z7K0 106 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 ADAMTSL2Q86TH1 951 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 PAQR7Q86WK9 346 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 ZNF655Q8N720 491 aaPredicted RBP13.96□□□□□ -0.18
VRK3-206ENST00000594090 OR56A3Q8NH54 315 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 STARD8Q92502 1023 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 MR1Q95460 341 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 ZNF285Q96NJ3 590 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 ZFYVE21Q9BQ24 234 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 SGPP1Q9BX95 441 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 UNKQ9C0B0 810 aaKnown RBP13.96□□□□□ -0.18
VRK3-206ENST00000594090 CUEDC1Q9NWM3 386 aaPredicted RBP13.96□□□□□ -0.18
VRK3-206ENST00000594090 UTP6Q9NYH9 597 aaKnown RBP13.96□□□□□ -0.18
VRK3-206ENST00000594090 CTNNAL1Q9UBT7 734 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 SRPK3Q9UPE1 567 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 PCDHGA6Q9Y5G7 932 aa13.96□□□□□ -0.18
VRK3-206ENST00000594090 MRPS18BQ9Y676 258 aaKnown RBP13.96□□□□□ -0.18
VRK3-206ENST00000594090 A0A0J9YVX5 310 aa13.95□□□□□ -0.18
VRK3-206ENST00000594090 ZNF891A8MT65 544 aaPredicted RBP13.95□□□□□ -0.18
VRK3-206ENST00000594090 SLC35E2BP0CK96 405 aa13.95□□□□□ -0.18
VRK3-206ENST00000594090 CCND1P24385 295 aa13.95□□□□□ -0.18
VRK3-206ENST00000594090 GCGRP47871 477 aa13.95□□□□□ -0.18
VRK3-206ENST00000594090 CDKL1Q00532 357 aa13.95□□□□□ -0.18
VRK3-206ENST00000594090 DNASE1L3Q13609 305 aa13.95□□□□□ -0.18
VRK3-206ENST00000594090 BMPR2Q13873 1038 aa13.95□□□□□ -0.18
VRK3-206ENST00000594090 ZXDCQ2QGD7 858 aaPredicted RBP13.95□□□□□ -0.18
VRK3-206ENST00000594090 PTCHD3Q3KNS1 767 aa13.95□□□□□ -0.18
VRK3-206ENST00000594090 TCTE1Q5JU00 501 aa13.95□□□□□ -0.18
VRK3-206ENST00000594090 ZNF385CQ66K41 422 aaPredicted RBP13.95□□□□□ -0.18
VRK3-206ENST00000594090 LCN10Q6JVE6 187 aa13.95□□□□□ -0.18
VRK3-206ENST00000594090 RAPH1Q70E73 1250 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms