RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 CXorf21Q9HAI6 301 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ANKHQ9HCJ1 492 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 CHST11Q9NPF2 352 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 AKIP1Q9NQ31 210 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ANLNQ9NQW6 1124 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 AGPAT4Q9NRZ5 378 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 SEMA3GQ9NS98 782 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 C20orf96Q9NUD7 363 aaPredicted RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 NDFIP2Q9NV92 336 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ASF1BQ9NVP2 202 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 SMOXQ9NWM0 555 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 OXSMQ9NWU1 459 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 TRPM5Q9NZQ8 1165 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 TMEM216Q9P0N5 145 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 TMEM181Q9P2C4 612 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 RCOR3Q9P2K3 495 aaPredicted RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 SAE1Q9UBE0 346 aaPredicted RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 ABCD2Q9UBJ2 740 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 DAPK2Q9UIK4 370 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ERVK-11Q9UQG0 969 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 OSGIN2Q9Y236 505 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 NCKAP1Q9Y2A7 1128 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 KCTD3Q9Y597 815 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 COPG1Q9Y678 874 aaKnown RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 KCNMB2Q9Y691 235 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 CUBNO60494 3623 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 DCHS2Q6V1P9 2916 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 DENND4CQ5VZ89 1909 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 A0A096LPK6 155 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 LOC100653049A0A140TA62 436 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 A0A1W2PP55 124 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 DHRS12A0PJE2 317 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 A6NCN8 305 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 NEMP2A6NFY4 417 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 LRRC72A6NJI9 287 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 SAC3D1A6NKF1 404 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 D6RAR5 112 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 TMX2-CTNND1H3BSU7 103 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 M0QX08 132 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 AP3B1O00203 1094 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 SOCS2O14508 198 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 SDHDO14521 159 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 NEMP1O14524 444 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 MRASO14807 208 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 LSM1O15116 133 aaKnown RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 SCAMP1O15126 338 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 CFLARO15519 480 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 MSI1O43347 362 aaKnown RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 RAD1O60671 282 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 DEAF1O75398 565 aaPredicted RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 KRT34O76011 436 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 GABARAPO95166 117 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 PIGNO95427 931 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 METTL18O95568 372 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 HPRP00739 348 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 POLBP06746 335 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 HEXAP06865 529 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 PABPC1P11940 636 aaKnown RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 HSD17B1P14061 328 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 KCNE1P15382 129 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 ATP6V1B2P21281 511 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 CYP2F1P24903 491 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 FASP25445 335 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 GSTM2P28161 218 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 ADH6P28332 368 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 GRK3P35626 688 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 ARL2P36404 184 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 SCNN1AP37088 669 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 HPCAL1P37235 193 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 SERPINB10P48595 397 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 POLD2P49005 469 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 BMXP51813 675 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 PGDP52209 483 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 CDH15P55291 814 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 DNAJB13P59910 316 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 RPS14P62263 151 aaKnown RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 PPP2CBP62714 309 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 PPP2CAP67775 309 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 OCA2Q04671 838 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 POU5F1BQ06416 359 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 IFRD2Q12894 506 aaPredicted RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 EPS8Q12929 822 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 LRP8Q14114 963 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 DOC2BQ14184 412 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 DPYSL2Q16555 572 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 PHKG1Q16816 387 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 GEN1Q17RS7 908 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 DEFB133Q30KQ1 61 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 FNDC3BQ53EP0 1204 aaKnown RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 BOLA3Q53S33 107 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 COQ5Q5HYK3 327 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 FGD3Q5JSP0 725 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 RBM48Q5RL73 367 aaKnown RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 ZNF362Q5T0B9 420 aaPredicted RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 CCNYL2Q5T2Q4 361 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 FAM102AQ5T9C2 384 aaPredicted RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 GPR107Q5VW38 600 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 OGFOD2Q6N063 350 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 GALNT18Q6P9A2 607 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 ISLR2Q6UXK2 745 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms