RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 ULBP3Q9BZM4 244 aa15.21■□□□□ 0.03
CHD3-215ENST00000572750 B3GNT4Q9C0J1 378 aa15.21■□□□□ 0.03
CHD3-215ENST00000572750 DERL2Q9GZP9 239 aa15.21■□□□□ 0.03
CHD3-215ENST00000572750 CLMPQ9H6B4 373 aa15.21■□□□□ 0.03
CHD3-215ENST00000572750 FANCEQ9HB96 536 aa15.21■□□□□ 0.03
CHD3-215ENST00000572750 SLC6A20Q9NP91 592 aa15.21■□□□□ 0.03
CHD3-215ENST00000572750 SNX15Q9NRS6 342 aa15.21■□□□□ 0.03
CHD3-215ENST00000572750 ENO2P09104 434 aaPredicted RBP15.2■□□□□ 0.02
CHD3-215ENST00000572750 HIST1H2AGP0C0S8 130 aaPredicted RBP15.2■□□□□ 0.02
CHD3-215ENST00000572750 LIPCP11150 499 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 HIST1H2ADP20671 130 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 SERPINB8P50452 374 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 IRF9Q00978 393 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 CSHL1Q14406 222 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 THEMIS2Q5TEJ8 643 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 FCRL6Q6DN72 434 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 PWWP2BQ6NUJ5 590 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 CYB5D1Q6P9G0 228 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 AGTRAPQ6RW13 159 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 FRA10AC1Q70Z53 315 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 ADAMTSL2Q86TH1 951 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 SPACA3Q8IXA5 215 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 OR1L3Q8NH93 324 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 DCAKDQ8WVC6 231 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 TCTN2Q96GX1 697 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 HIST1H2AHQ96KK5 128 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 HIST1H2AJQ99878 128 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 ZPBPQ9BS86 351 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 H2AFJQ9BTM1 129 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 ATG10Q9H0Y0 220 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 CCDC177Q9NQR7 707 aaPredicted RBP15.2■□□□□ 0.02
CHD3-215ENST00000572750 CTNNAL1Q9UBT7 734 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 IKBKGQ9Y6K9 419 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 PCM1Q15154 2024 aa15.2■□□□□ 0.02
CHD3-215ENST00000572750 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.19■□□□□ 0.02
CHD3-215ENST00000572750 RRP8O43159 456 aaKnown RBP15.19■□□□□ 0.02
CHD3-215ENST00000572750 KLK10O43240 276 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 KIAA0754O94854 1291 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 DLGAP3O95886 979 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 ALDOAP04075 364 aaKnown RBP15.19■□□□□ 0.02
CHD3-215ENST00000572750 CTSBP07858 339 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 MSL3P1P0C860 447 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 CD1DP15813 335 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 CRABP2P29373 138 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 CMPK1P30085 196 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 GRIA3P42263 894 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 MSH2P43246 934 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 AP1S2P56377 157 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 SRSF6Q13247 344 aaKnown RBP15.19■□□□□ 0.02
CHD3-215ENST00000572750 SLC29A2Q14542 456 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 OR4D1Q15615 310 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 ZXDCQ2QGD7 858 aaPredicted RBP15.19■□□□□ 0.02
CHD3-215ENST00000572750 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.19■□□□□ 0.02
CHD3-215ENST00000572750 PRAMEF17Q5VTA0 474 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 PRAMEF13Q5VWM6 474 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 ICE2Q659A1 982 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 TAOK1Q7L7X3 1001 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 VASH2Q86V25 355 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 TMEM126BQ8IUX1 230 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 ALKBH8Q96BT7 664 aaKnown RBP15.19■□□□□ 0.02
CHD3-215ENST00000572750 PTERQ96BW5 349 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 UBXN10Q96LJ8 280 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 TRIM54Q9BYV2 358 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 INTS7Q9NVH2 962 aaKnown RBP15.19■□□□□ 0.02
CHD3-215ENST00000572750 PILRAQ9UKJ1 303 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 NOVA2Q9UNW9 492 aaKnown RBP15.19■□□□□ 0.02
CHD3-215ENST00000572750 SH2B3Q9UQQ2 575 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 SPTBP11277 2137 aa15.19■□□□□ 0.02
CHD3-215ENST00000572750 HEATR5BQ9P2D3 2071 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 UTP20O75691 2785 aaKnown RBP15.18■□□□□ 0.02
CHD3-215ENST00000572750 IGKV1-8A0A0C4DH67 115 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 NCF1BA6NI72 391 aaPredicted RBP15.18■□□□□ 0.02
CHD3-215ENST00000572750 NCF1CA8MVU1 366 aaPredicted RBP15.18■□□□□ 0.02
CHD3-215ENST00000572750 RAD1O60671 282 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 SCRG1O75711 98 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 FKBP9O95302 570 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 NCF1P14598 390 aaPredicted RBP15.18■□□□□ 0.02
CHD3-215ENST00000572750 GCAP28676 217 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 GABRA4P48169 554 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 CSRP3P50461 194 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 TLE3Q04726 772 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 DLG1Q12959 904 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 NAE1Q13564 534 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 ERCC6LQ2NKX8 1250 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 FIGLAQ6QHK4 219 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 TIPARPQ7Z3E1 657 aaKnown RBP15.18■□□□□ 0.02
CHD3-215ENST00000572750 TBC1D1Q86TI0 1168 aaPredicted RBP15.18■□□□□ 0.02
CHD3-215ENST00000572750 DTX1Q86Y01 620 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 CENPLQ8N0S6 344 aaPredicted RBP15.18■□□□□ 0.02
CHD3-215ENST00000572750 GALNT6Q8NCL4 622 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 KCTD4Q8WVF5 259 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 UBLCP1Q8WVY7 318 aaPredicted RBP15.18■□□□□ 0.02
CHD3-215ENST00000572750 ANKRD7Q92527 254 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 N4BP2L2Q92802 583 aaPredicted RBP15.18■□□□□ 0.02
CHD3-215ENST00000572750 EXT2Q93063 718 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 PYCR2Q96C36 320 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 EGFL8Q99944 293 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 DPH7Q9BTV6 452 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 DHRS4Q9BTZ2 278 aa15.18■□□□□ 0.02
CHD3-215ENST00000572750 SEMA4CQ9C0C4 833 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms