RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 CSPG4P5Q96PW8 444 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 GDF15Q99988 308 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 TMEM246Q9BRR3 403 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 TUBB6Q9BUF5 446 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 C1orf50Q9BV19 199 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 EDEM2Q9BV94 578 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 SPATA5L1Q9BVQ7 753 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 PAPOLGQ9BWT3 736 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 BBS2Q9BXC9 721 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 IDI2Q9BXS1 227 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 CADM1Q9BY67 442 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 NFKBIZQ9BYH8 718 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 MRPL37Q9BZE1 423 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 ZYG11BQ9C0D3 744 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 SLC22A4Q9H015 551 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 RACGAP1Q9H0H5 632 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 ALX4Q9H161 411 aaPredicted RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 ISCUQ9H1K1 167 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 SLC26A1Q9H2B4 701 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 KLK15Q9H2R5 256 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 SLC12A5Q9H2X9 1139 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 R3HDMLQ9H3Y0 253 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 RIMS4Q9H426 269 aaPredicted RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 PIGUQ9H490 435 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 C11orf49Q9H6J7 331 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 RANBP3Q9H6Z4 567 aaPredicted RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 MINDY3Q9H8M7 445 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 LRRC40Q9H9A6 602 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 ZNF556Q9HAH1 456 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 MAGEE1Q9HCI5 957 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 C19orf12Q9NSK7 152 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 FBXO28Q9NVF7 368 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 ADPRHL2Q9NX46 363 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 FOXJ2Q9P0K8 574 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 SLC17A6Q9P2U8 582 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 GRHPRQ9UBQ7 328 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 RNF14Q9UBS8 474 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 RAB26Q9ULW5 256 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 ZBTB32Q9Y2Y4 487 aaPredicted RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 PLLPQ9Y342 182 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 SAMHD1Q9Y3Z3 626 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 UGT2A1Q9Y4X1 527 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 PSAT1Q9Y617 370 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 DICER1Q9UPY3 1922 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 RIMBP3CA6NJZ7 1639 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 RIMBP3BA6NNM3 1639 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 UTYO14607 1347 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 ATP8B3O60423 1300 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 CAMTA1Q9Y6Y1 1673 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 CDC42BPGQ6DT37 1551 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 A0A087WWV3 80 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 A0A0U1RQV5 110 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 A0A1W2PRG0 241 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ISPDA4D126 451 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 TRABD2BA6NFA1 517 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 OR6C70A6NIJ9 312 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ZNF729A6NN14 1252 aaPredicted RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 A8MXE2 369 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ADM5C9JUS6 153 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 H3BSA7 217 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 I3L4J1 428 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 J3QRK9 145 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SNAP23O00161 211 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ABCD4O14678 606 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 KCNQ3O43525 872 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SGCEO43556 437 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 BUB1O43683 1085 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SRGAP2O75044 1071 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 USP12O75317 370 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 GCATO75600 419 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 GPX5O75715 221 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 CIB2O75838 187 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SCO1O75880 301 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SOAT2O75908 522 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 CABYRO75952 493 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 UBXN7O94888 489 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 LYPLA2O95372 231 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 NSA2O95478 260 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 RAB3DO95716 219 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 TGM6O95932 706 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 EPOP01588 193 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 IGHV2-70P01814 119 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 CRYABP02511 175 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 PRKCBP05771 671 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 LCKP06239 509 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 CDK1P06493 297 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 FCER2P06734 321 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 KLK3P07288 261 aaPredicted RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 GRPP07492 148 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 STSP08842 583 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 CD63P08962 238 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 GNAO1P09471 354 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 CNPP09543 421 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 FAM58BPP0C7Q3 252 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 EBLN1P0CF75 366 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 T-ENOLP0DO92 83 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ARP10275 920 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SAGP10523 405 aaPredicted RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 HSPD1P10809 573 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 MYCLP12524 364 aaPredicted RBP3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms