RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 NTRK1P04629 796 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 INHBAP08476 426 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 ANXA5P08758 320 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 LIFP15018 202 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 AGXTP21549 392 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 HRH2P25021 359 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 DLSTP36957 453 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 GRIA3P42263 894 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 ATP6V0D1P61421 351 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 MC1RQ01726 317 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 EFTUD2Q15029 972 aaKnown RBP eCLIP12.48□□□□□ -0.417e-7■■■■□ 22
CLK3-224ENST00000568605 ZIC1Q15915 447 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 PHKG1Q16816 387 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 TAF1BQ53T94 588 aaPredicted RBP12.48□□□□□ -0.41
CLK3-224ENST00000568605 YOD1Q5VVQ6 348 aaPredicted RBP12.48□□□□□ -0.41
CLK3-224ENST00000568605 CAPN13Q6MZZ7 669 aaPredicted RBP12.48□□□□□ -0.41
CLK3-224ENST00000568605 INO80CQ6PI98 192 aaPredicted RBP12.48□□□□□ -0.41
CLK3-224ENST00000568605 AGTRAPQ6RW13 159 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 SBSNQ6UWP8 590 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 TIPARPQ7Z3E1 657 aaKnown RBP12.48□□□□□ -0.41
CLK3-224ENST00000568605 ADCK2Q7Z695 626 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 TBC1D1Q86TI0 1168 aaPredicted RBP12.48□□□□□ -0.41
CLK3-224ENST00000568605 CEP97Q8IW35 865 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 FAM20CQ8IXL6 584 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 CNPY4Q8N129 248 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 TTC29Q8NA56 475 aaPredicted RBP12.48□□□□□ -0.41
CLK3-224ENST00000568605 PROKR1Q8TCW9 393 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 SNRNP27Q8WVK2 155 aaKnown RBP12.48□□□□□ -0.41
CLK3-224ENST00000568605 MED8Q96G25 268 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 EGFL8Q99944 293 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 ZFYVE21Q9BQ24 234 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 C17orf62Q9BQA9 187 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 DPH7Q9BTV6 452 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 NDC1Q9BTX1 674 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 FUT8Q9BYC5 575 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 FAM117AQ9C073 453 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 PRORYQ9H606 182 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 LHX9Q9NQ69 397 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 EURLQ9NYK6 297 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 MTO1Q9Y2Z2 717 aaKnown RBP12.48□□□□□ -0.41
CLK3-224ENST00000568605 PCDHGA4Q9Y5G9 962 aa12.48□□□□□ -0.41
CLK3-224ENST00000568605 OR2A25A4D2G3 310 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 NPEPPSL1A6NEC2 478 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 C9J4A7 227 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 PHGDHO43175 533 aaKnown RBP12.47□□□□□ -0.41
CLK3-224ENST00000568605 EFSO43281 561 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 ZNF749O43361 778 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 EZRP15311 586 aaKnown RBP12.47□□□□□ -0.41
CLK3-224ENST00000568605 CRABP2P29373 138 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 HNMTP50135 292 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 SERPINB9P50453 376 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 ARSFP54793 590 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 CDKL1Q00532 357 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 PRDX1Q06830 199 aaKnown RBP12.47□□□□□ -0.41
CLK3-224ENST00000568605 GRM7Q14831 915 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 ZKSCAN8Q15776 578 aaPredicted RBP12.47□□□□□ -0.41
CLK3-224ENST00000568605 ARHGAP40Q5TG30 622 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 FCRL6Q6DN72 434 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 MBOAT1Q6ZNC8 495 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 RNF44Q7L0R7 432 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 TRMT10CQ7L0Y3 403 aaKnown RBP12.47□□□□□ -0.41
CLK3-224ENST00000568605 C17orf64Q86WR6 236 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 DSELQ8IZU8 1212 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 TCAIMQ8N3R3 496 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 DNAJC22Q8N4W6 341 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 EIF1ADQ8N9N8 165 aaKnown RBP12.47□□□□□ -0.41
CLK3-224ENST00000568605 MR1Q95460 341 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 RERGQ96A58 199 aaPredicted RBP12.47□□□□□ -0.41
CLK3-224ENST00000568605 FBXL8Q96CD0 374 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 SLC45A3Q96JT2 553 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 HAUS8Q9BT25 410 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 CAB39LQ9H9S4 337 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 CROTQ9UKG9 612 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 SNX7Q9UNH6 387 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 KLHL20Q9Y2M5 609 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 OARD1Q9Y530 152 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 SCN3AQ9NY46 2000 aa12.47□□□□□ -0.41
CLK3-224ENST00000568605 LOC101059948A0A1B0GTJ6 334 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 EXOC1LA0A1B0GW35 172 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 ESPNB1AK53 854 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 SRPX2O60687 465 aaPredicted RBP12.46□□□□□ -0.41
CLK3-224ENST00000568605 KRT38O76015 456 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 GUCA1CO95843 209 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 S100BP04271 92 aaPredicted RBP12.46□□□□□ -0.41
CLK3-224ENST00000568605 ABHD2P08910 425 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 CCDC166P0CW27 439 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 TCN2P20062 427 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 CNTFP26441 200 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 GRK3P35626 688 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 SLC26A3P40879 764 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 GABRA4P48169 554 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 SERPINB8P50452 374 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 PGGT1BP53609 377 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 RPS15P62841 145 aaKnown RBP12.46□□□□□ -0.41
CLK3-224ENST00000568605 RHDQ02161 417 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 GPS2Q13227 327 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 DNASE1L3Q13609 305 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 TSNQ15631 228 aaKnown RBP12.46□□□□□ -0.41
CLK3-224ENST00000568605 PPP1R3AQ16821 1122 aa12.46□□□□□ -0.41
CLK3-224ENST00000568605 RHBDD2Q6NTF9 364 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms