RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 EPB41L1Q9H4G0 881 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 CERS4Q9HA82 394 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 ZDHHC4Q9NPG8 344 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 PNPLA3Q9NST1 481 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 TRANK1O15050 2925 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 ENO4A6NNW6 628 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 H0YIV9 168 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 H3BM21 787 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 GSTA4O15217 222 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 CLOCKO15516 846 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 C1orf105O95561 183 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 NRIP1P48552 1158 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 ZNF33BQ06732 778 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 PCDH1Q08174 1060 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 ELP6Q0PNE2 266 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 SF1Q15637 639 aaKnown RBP19.64■□□□□ 0.74
CLN3-230ENST00000568076 SLC36A3Q495N2 470 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 ATG9BQ674R7 924 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 RAET1GQ6H3X3 334 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 OR4F3Q6IEY1 312 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 KRT80Q6KB66 452 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 FAM9CQ8IZT9 166 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 CSGALNACT1Q8TDX6 532 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 ITCHQ96J02 903 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 GRIP2Q9C0E4 1043 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 VPS29Q9UBQ0 182 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 ADGRE2Q9UHX3 823 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 PADI4Q9UM07 663 aa19.64■□□□□ 0.74
CLN3-230ENST00000568076 SMIM31A0A1B0GVY4 71 aa19.64■□□□□ 0.73
CLN3-230ENST00000568076 CXCR6O00574 342 aa19.64■□□□□ 0.73
CLN3-230ENST00000568076 PAPLNO95428 1278 aa19.64■□□□□ 0.73
CLN3-230ENST00000568076 H6PDO95479 791 aa19.64■□□□□ 0.73
CLN3-230ENST00000568076 ETHE1O95571 254 aa19.64■□□□□ 0.73
CLN3-230ENST00000568076 PCNAP12004 261 aa19.64■□□□□ 0.73
CLN3-230ENST00000568076 GPR1P46091 355 aa19.64■□□□□ 0.73
CLN3-230ENST00000568076 DDX39BQ13838 428 aaKnown RBP19.64■□□□□ 0.73
CLN3-230ENST00000568076 EIF4HQ15056 248 aaKnown RBP19.64■□□□□ 0.73
CLN3-230ENST00000568076 NADK2Q4G0N4 442 aa19.64■□□□□ 0.73
CLN3-230ENST00000568076 ZNF765Q7L2R6 523 aa19.64■□□□□ 0.73
CLN3-230ENST00000568076 ZNF547Q8IVP9 402 aa19.64■□□□□ 0.73
CLN3-230ENST00000568076 CFAP206Q8IYR0 622 aa19.64■□□□□ 0.73
CLN3-230ENST00000568076 MICU2Q8IYU8 434 aa19.64■□□□□ 0.73
CLN3-230ENST00000568076 FBXO30Q8TB52 745 aa19.64■□□□□ 0.73
CLN3-230ENST00000568076 C11orf24Q96F05 449 aaPredicted RBP19.64■□□□□ 0.73
CLN3-230ENST00000568076 MTIF3Q9H2K0 278 aaKnown RBP19.64■□□□□ 0.73
CLN3-230ENST00000568076 RMND5AQ9H871 391 aa19.64■□□□□ 0.73
CLN3-230ENST00000568076 C8orf4Q9NR00 106 aa19.64■□□□□ 0.73
CLN3-230ENST00000568076 COL4A3Q01955 1670 aa19.64■□□□□ 0.73
CLN3-230ENST00000568076 H3BNH8 94 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 GMNNO75496 209 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 PRSS23O95084 383 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 FESP07332 822 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 FSHRP23945 695 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 HNF4AP41235 474 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 MTAPQ13126 283 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 UGT8Q16880 541 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 FAM98BQ52LJ0 330 aaKnown RBP19.63■□□□□ 0.73
CLN3-230ENST00000568076 TMEM214Q6NUQ4 689 aaKnown RBP19.63■□□□□ 0.73
CLN3-230ENST00000568076 GPR180Q86V85 440 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 TRAPPC5Q8IUR0 188 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 OR7A2PQ8NGA2 310 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 ZNF480Q8WV37 535 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 FOPNLQ96NB1 174 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 BDH2Q9BUT1 245 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 OSBPL6Q9BZF3 934 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 CAAP1Q9H8G2 361 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 ATXN10Q9UBB4 475 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 LIMD1Q9UGP4 676 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 UTS2RQ9UKP6 389 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 HCN2Q9UL51 889 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 ATG2AQ2TAZ0 1938 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 FAM220BPB1ANY3 271 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 C1QCP02747 245 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 C7P10643 843 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 ZNF23P17027 643 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 MYF6P23409 242 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 FCARP24071 287 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 RPL10P27635 214 aaKnown RBP19.63■□□□□ 0.73
CLN3-230ENST00000568076 SLC14A1Q13336 389 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 DUSP6Q16828 381 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 GET4Q7L5D6 327 aaPredicted RBP19.63■□□□□ 0.73
CLN3-230ENST00000568076 ZNF551Q7Z340 670 aaPredicted RBP19.63■□□□□ 0.73
CLN3-230ENST00000568076 SYT12Q8IV01 421 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 TMEM132CQ8N3T6 1108 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 LMNTD1Q8N9Z9 388 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 TERB1Q8NA31 727 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 TNIP2Q8NFZ5 429 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 MAGEE2Q8TD90 523 aaPredicted RBP19.63■□□□□ 0.73
CLN3-230ENST00000568076 SGK2Q9HBY8 427 aa19.63■□□□□ 0.73
CLN3-230ENST00000568076 MAGEB17A8MXT2 336 aa19.62■□□□□ 0.73
CLN3-230ENST00000568076 SCELO95171 688 aa19.62■□□□□ 0.73
CLN3-230ENST00000568076 PRPS1L1P21108 318 aa19.62■□□□□ 0.73
CLN3-230ENST00000568076 IL12RB1P42701 662 aa19.62■□□□□ 0.73
CLN3-230ENST00000568076 KIR3DL1P43629 444 aa19.62■□□□□ 0.73
CLN3-230ENST00000568076 MAPK9P45984 424 aa19.62■□□□□ 0.73
CLN3-230ENST00000568076 RPS9P46781 194 aaKnown RBP19.62■□□□□ 0.73
CLN3-230ENST00000568076 WNT3P56703 355 aa19.62■□□□□ 0.73
CLN3-230ENST00000568076 CHRNB3Q05901 458 aa19.62■□□□□ 0.73
CLN3-230ENST00000568076 DPTQ07507 201 aa19.62■□□□□ 0.73
CLN3-230ENST00000568076 E2F2Q14209 437 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms