RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TAPBPO15533 448 aa18.79■□□□□ 0.6
CLN3-225ENST00000566824 FGF5P12034 268 aa18.79■□□□□ 0.6
CLN3-225ENST00000566824 TGFBIQ15582 683 aa18.79■□□□□ 0.6
CLN3-225ENST00000566824 DCAF12Q5T6F0 453 aa18.79■□□□□ 0.6
CLN3-225ENST00000566824 PWWP2BQ6NUJ5 590 aa18.79■□□□□ 0.6
CLN3-225ENST00000566824 TAOK1Q7L7X3 1001 aa18.79■□□□□ 0.6
CLN3-225ENST00000566824 GPSM1Q86YR5 675 aa18.79■□□□□ 0.6
CLN3-225ENST00000566824 KDF1Q8NAX2 398 aaPredicted RBP18.79■□□□□ 0.6
CLN3-225ENST00000566824 OR56A3Q8NH54 315 aa18.79■□□□□ 0.6
CLN3-225ENST00000566824 FGF11Q92914 225 aa18.79■□□□□ 0.6
CLN3-225ENST00000566824 EXT2Q93063 718 aa18.79■□□□□ 0.6
CLN3-225ENST00000566824 TCTN2Q96GX1 697 aa18.79■□□□□ 0.6
CLN3-225ENST00000566824 NAF1Q96HR8 494 aaKnown RBP18.79■□□□□ 0.6
CLN3-225ENST00000566824 FCRL4Q96PJ5 515 aa18.79■□□□□ 0.6
CLN3-225ENST00000566824 ATOH8Q96SQ7 321 aa18.79■□□□□ 0.6
CLN3-225ENST00000566824 DPH7Q9BTV6 452 aa18.79■□□□□ 0.6
CLN3-225ENST00000566824 TRIM54Q9BYV2 358 aa18.79■□□□□ 0.6
CLN3-225ENST00000566824 NMRAL1Q9HBL8 299 aa18.79■□□□□ 0.6
CLN3-225ENST00000566824 CCDC177Q9NQR7 707 aaPredicted RBP18.79■□□□□ 0.6
CLN3-225ENST00000566824 EURLQ9NYK6 297 aa18.79■□□□□ 0.6
CLN3-225ENST00000566824 PSMC3IPQ9P2W1 217 aaPredicted RBP18.79■□□□□ 0.6
CLN3-225ENST00000566824 FER1L5A0AVI2 2057 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 A0A1W2PPM1 405 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 ZNF839A8K0R7 811 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 TMEM150CB9EJG8 249 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 KRT37O76014 449 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 KLHL2O95198 593 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 NPPBP16860 134 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 CNTFP26441 200 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 SLC26A3P40879 764 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 GDF5P43026 501 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 CDKL1Q00532 357 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 PRDX1Q06830 199 aaKnown RBP18.78■□□□□ 0.6
CLN3-225ENST00000566824 TGIF1Q15583 401 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 TAF1BQ53T94 588 aaPredicted RBP18.78■□□□□ 0.6
CLN3-225ENST00000566824 TMTC4Q5T4D3 741 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 THEMIS2Q5TEJ8 643 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 PRAMEF13Q5VWM6 474 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 FRA10AC1Q70Z53 315 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 PROSER1Q86XN7 944 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 ESAMQ96AP7 390 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 RHBDF1Q96CC6 855 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 EGFL8Q99944 293 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 TMEM79Q9BSE2 394 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 SPRTNQ9H040 489 aaPredicted RBP18.78■□□□□ 0.6
CLN3-225ENST00000566824 ASB1Q9Y576 335 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 KLK4Q9Y5K2 254 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 ZFHX4Q86UP3 3567 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 ZZEF1O43149 2961 aa18.78■□□□□ 0.6
CLN3-225ENST00000566824 H3BMH7 237 aa18.77■□□□□ 0.6
CLN3-225ENST00000566824 UBXN8O00124 270 aa18.77■□□□□ 0.6
CLN3-225ENST00000566824 CMPK1P30085 196 aa18.77■□□□□ 0.6
CLN3-225ENST00000566824 RAB15P59190 212 aa18.77■□□□□ 0.6
CLN3-225ENST00000566824 ACY1Q03154 408 aa18.77■□□□□ 0.6
CLN3-225ENST00000566824 IL11RAQ14626 422 aa18.77■□□□□ 0.6
CLN3-225ENST00000566824 PTCHD3Q3KNS1 767 aa18.77■□□□□ 0.6
CLN3-225ENST00000566824 CEACAM20Q6UY09 585 aa18.77■□□□□ 0.6
CLN3-225ENST00000566824 TIFABQ6ZNK6 161 aa18.77■□□□□ 0.6
CLN3-225ENST00000566824 TIPARPQ7Z3E1 657 aaKnown RBP18.77■□□□□ 0.6
CLN3-225ENST00000566824 PAQR7Q86WK9 346 aa18.77■□□□□ 0.6
CLN3-225ENST00000566824 CCDC77Q9BR77 488 aa18.77■□□□□ 0.6
CLN3-225ENST00000566824 MRPS30Q9NP92 439 aaKnown RBP18.77■□□□□ 0.6
CLN3-225ENST00000566824 RARRES3Q9UL19 164 aa18.77■□□□□ 0.6
CLN3-225ENST00000566824 RNF112Q9ULX5 631 aa18.77■□□□□ 0.6
CLN3-225ENST00000566824 EPG5Q9HCE0 2579 aa18.77■□□□□ 0.59
CLN3-225ENST00000566824 OR2A25A4D2G3 310 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 GOLGA8RI6L899 631 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 ANXA5P08758 320 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 NUDT17P0C025 328 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 MTHFD2P13995 350 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 TMEM164Q5U3C3 297 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 FRMPD2BQ6IN97 320 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 ZNF425Q6IV72 752 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 FBXO42Q6P3S6 717 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 PPP1R3BQ86XI6 285 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 PLD3Q8IV08 490 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 MREGQ8N565 214 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 SLC38A9Q8NBW4 561 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 SNIP1Q8TAD8 396 aaKnown RBP18.76■□□□□ 0.59
CLN3-225ENST00000566824 ZUFSPQ96AP4 578 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 ZBTB9Q96C00 473 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 PLCD4Q9BRC7 762 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 ASPSCR1Q9BZE9 553 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 B3GNT4Q9C0J1 378 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 CHRNA10Q9GZZ6 450 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 PCMTD2Q9NV79 361 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 PILRAQ9UKJ1 303 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 ACSL6Q9UKU0 697 aa18.76■□□□□ 0.59
CLN3-225ENST00000566824 LOC105369274A0A096LPK9 316 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 LOC102723532A0A0G2JNH3 316 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 PABPN1LA6NDY0 278 aaKnown RBP18.75■□□□□ 0.59
CLN3-225ENST00000566824 TARM1B6A8C7 271 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 H7BY64 318 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 HAT1O14929 419 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 KERAO60938 352 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 STK17BO94768 372 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 KIAA0754O94854 1291 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 MSL3P1P0C860 447 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 CDH1P12830 882 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 SLC6A12P48065 614 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms