RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 CCDC28BQ9BUN5 200 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 E9PBE3 544 aa29.52■■■□□ 2.32
CTCF-203ENST00000566078 KLHL41O60662 606 aa29.52■■■□□ 2.32
CTCF-203ENST00000566078 VARSP26640 1264 aaKnown RBP29.52■■■□□ 2.32
CTCF-203ENST00000566078 CATSPEREQ5SY80 951 aa29.52■■■□□ 2.32
CTCF-203ENST00000566078 GRHL2Q6ISB3 625 aa29.52■■■□□ 2.32
CTCF-203ENST00000566078 C6orf89Q6UWU4 347 aa29.52■■■□□ 2.32
CTCF-203ENST00000566078 TRPM8Q7Z2W7 1104 aa29.52■■■□□ 2.32
CTCF-203ENST00000566078 ZFPM2Q8WW38 1151 aa29.52■■■□□ 2.32
CTCF-203ENST00000566078 CCT6BQ92526 530 aa29.52■■■□□ 2.32
CTCF-203ENST00000566078 LRRC37BQ96QE4 947 aa29.52■■■□□ 2.32
CTCF-203ENST00000566078 SRMSQ9H3Y6 488 aa29.52■■■□□ 2.32
CTCF-203ENST00000566078 C11orf16Q9NQ32 467 aa29.52■■■□□ 2.32
CTCF-203ENST00000566078 PCDH15Q96QU1 1955 aa29.52■■■□□ 2.32
CTCF-203ENST00000566078 ATP6AP2A0A1C7CYW4 349 aa29.51■■■□□ 2.31
CTCF-203ENST00000566078 TNFRSF10AO00220 468 aa29.51■■■□□ 2.31
CTCF-203ENST00000566078 MANBAO00462 879 aa29.51■■■□□ 2.31
CTCF-203ENST00000566078 ATP6AP2O75787 350 aa29.51■■■□□ 2.31
CTCF-203ENST00000566078 CFIP05156 583 aa29.51■■■□□ 2.31
CTCF-203ENST00000566078 ZRSR2Q15696 482 aaKnown RBP29.51■■■□□ 2.31
CTCF-203ENST00000566078 C17orf64Q86WR6 236 aa29.51■■■□□ 2.31
CTCF-203ENST00000566078 ACTRT2Q8TDY3 377 aa29.51■■■□□ 2.31
CTCF-203ENST00000566078 PTCD3Q96EY7 689 aaKnown RBP29.51■■■□□ 2.31
CTCF-203ENST00000566078 PFDN4Q9NQP4 134 aa29.51■■■□□ 2.31
CTCF-203ENST00000566078 OR6C2Q9NZP2 312 aa29.51■■■□□ 2.31
CTCF-203ENST00000566078 SNX6Q9UNH7 406 aa29.51■■■□□ 2.31
CTCF-203ENST00000566078 KRT6AP02538 564 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 KRT6BP04259 564 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 CDH1P12830 882 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 HOXD12P35452 270 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 HNF4AP41235 474 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 CASP2P42575 452 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 DPP6P42658 865 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 KRT6CP48668 564 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 ARRB1P49407 418 aaPredicted RBP29.5■■■□□ 2.31
CTCF-203ENST00000566078 HHEXQ03014 270 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 ABRAXAS2Q15018 415 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 TBCCQ15814 346 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 LPAL2Q16609 132 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 DUOXA1Q1HG43 343 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 ATG9BQ674R7 924 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 NXPE4Q6UWF7 544 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 ZNF771Q7L3S4 317 aaPredicted RBP29.5■■■□□ 2.31
CTCF-203ENST00000566078 FITM2Q8N6M3 262 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 HBEGFQ99075 208 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 FSCN3Q9NQT6 498 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 PCDHB11Q9Y5F2 797 aa29.5■■■□□ 2.31
CTCF-203ENST00000566078 CCT8L1PA6NM43 557 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 FCHO1O14526 889 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 MAZP56270 477 aaKnown RBP29.49■■■□□ 2.31
CTCF-203ENST00000566078 GRIK2Q13002 908 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 E2F2Q14209 437 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 SGO1Q5FBB7 561 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 XKR7Q5GH72 579 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 HOMEZQ8IX15 550 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 CEP70Q8NHQ1 597 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 ERP27Q96DN0 273 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 WDR34Q96EX3 536 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 CCT7Q99832 543 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 NMUR2Q9GZQ4 415 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 MYLK2Q9H1R3 596 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 EHD1Q9H4M9 534 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 ELOVL6Q9H5J4 265 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 FARSBQ9NSD9 589 aaKnown RBP29.49■■■□□ 2.31
CTCF-203ENST00000566078 ZFP69BQ9UJL9 534 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 ZNF490Q9ULM2 529 aaPredicted RBP29.49■■■□□ 2.31
CTCF-203ENST00000566078 WDFY4Q6ZS81 3184 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 ULK1O75385 1050 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 CHRM5P08912 532 aaPredicted RBP29.49■■■□□ 2.31
CTCF-203ENST00000566078 C1GALT1C1LP0DN25 315 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 PEBP1P30086 187 aaKnown RBP29.49■■■□□ 2.31
CTCF-203ENST00000566078 YBX1P67809 324 aaKnown RBP29.49■■■□□ 2.31
CTCF-203ENST00000566078 BNIP3Q12983 259 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 SHBQ15464 509 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 ICE2Q659A1 982 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 RABEPKQ7Z6M1 372 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 RBM12BQ8IXT5 1001 aaKnown RBP29.49■■■□□ 2.31
CTCF-203ENST00000566078 EFCAB11Q9BUY7 163 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 SPHK1Q9NYA1 384 aa29.49■■■□□ 2.31
CTCF-203ENST00000566078 ZNF318Q5VUA4 2279 aa29.48■■■□□ 2.31
CTCF-203ENST00000566078 GALR2O43603 387 aaPredicted RBP29.48■■■□□ 2.31
CTCF-203ENST00000566078 NOBOXO60393 691 aa29.48■■■□□ 2.31
CTCF-203ENST00000566078 CCDC22O60826 627 aa29.48■■■□□ 2.31
CTCF-203ENST00000566078 SERPINA6P08185 405 aa29.48■■■□□ 2.31
CTCF-203ENST00000566078 RXRGP48443 463 aa29.48■■■□□ 2.31
CTCF-203ENST00000566078 SLBPQ14493 270 aaKnown RBP eCLIP29.48■■■□□ 2.31
CTCF-203ENST00000566078 AVL9Q8NBF6 648 aa29.48■■■□□ 2.31
CTCF-203ENST00000566078 OR2T11Q8NH01 316 aa29.48■■■□□ 2.31
CTCF-203ENST00000566078 CEP76Q8TAP6 659 aa29.48■■■□□ 2.31
CTCF-203ENST00000566078 USP7Q93009 1102 aa29.48■■■□□ 2.31
CTCF-203ENST00000566078 TUBGCP3Q96CW5 907 aa29.48■■■□□ 2.31
CTCF-203ENST00000566078 MTFMTQ96DP5 389 aaKnown RBP29.48■■■□□ 2.31
CTCF-203ENST00000566078 AKTIPQ9H8T0 292 aa29.48■■■□□ 2.31
CTCF-203ENST00000566078 CUEDC1Q9NWM3 386 aaPredicted RBP29.48■■■□□ 2.31
CTCF-203ENST00000566078 GIMAP2Q9UG22 337 aa29.48■■■□□ 2.31
CTCF-203ENST00000566078 TRIM33Q9UPN9 1127 aa29.48■■■□□ 2.31
CTCF-203ENST00000566078 NCF2P19878 526 aaPredicted RBP29.47■■■□□ 2.31
CTCF-203ENST00000566078 ZNF423Q2M1K9 1284 aa29.47■■■□□ 2.31
CTCF-203ENST00000566078 RNF165Q6ZSG1 346 aa29.47■■■□□ 2.31
CTCF-203ENST00000566078 TMEM26Q6ZUK4 368 aa29.47■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms