RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 RAB15P59190 212 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 HSD11B2P80365 405 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 CSHL1Q14406 222 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 ZKSCAN8Q15776 578 aaPredicted RBP16.62■□□□□ 0.25
CLN3-217ENST00000565354 CYP2A13Q16696 494 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 SLC5A12Q1EHB4 618 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 THEMIS2Q5TEJ8 643 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 BORAQ6PGQ7 559 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 CLEC18BQ6UXF7 455 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 TRIM73Q86UV7 250 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 CLEC18CQ8NCF0 446 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 DENND1AQ8TEH3 1009 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 ANKRD49Q8WVL7 239 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 SMPDL3AQ92484 453 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 ANKRD7Q92527 254 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 N4BP2L2Q92802 583 aaPredicted RBP16.62■□□□□ 0.25
CLN3-217ENST00000565354 PPM1MQ96MI6 270 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 TAAR9Q96RI9 348 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 MENTQ9BUN1 341 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 UNKQ9C0B0 810 aaKnown RBP16.62■□□□□ 0.25
CLN3-217ENST00000565354 DERL2Q9GZP9 239 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 KLHL25Q9H0H3 589 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 FANCEQ9HB96 536 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 PDE7BQ9NP56 450 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 INTS7Q9NVH2 962 aaKnown RBP16.62■□□□□ 0.25
CLN3-217ENST00000565354 ARL15Q9NXU5 204 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 UTP6Q9NYH9 597 aaKnown RBP16.62■□□□□ 0.25
CLN3-217ENST00000565354 A0A087X1B8 175 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 CDC7O00311 574 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 POLR1CO15160 346 aaPredicted RBP16.61■□□□□ 0.25
CLN3-217ENST00000565354 GUCA1CO95843 209 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 SLC16A8O95907 504 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 PVRP15151 417 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 ST6GAL1P15907 406 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 PEBP1P30086 187 aaKnown RBP16.61■□□□□ 0.25
CLN3-217ENST00000565354 AP1S2P56377 157 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 ATP6V0D1P61421 351 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 FOXK1P85037 733 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 MC2RQ01718 297 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 ACY1Q03154 408 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 FASTKQ14296 549 aaKnown RBP16.61■□□□□ 0.25
CLN3-217ENST00000565354 DCAF12Q5T6F0 453 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 SUSD1Q6UWL2 747 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 CEACAM20Q6UY09 585 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 CCDC91Q7Z6B0 441 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 ADAMTSL2Q86TH1 951 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 PPFIBP2Q8ND30 876 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 HMGCLL1Q8TB92 370 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 ZNF480Q8WV37 535 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 ALKBH8Q96BT7 664 aaKnown RBP16.61■□□□□ 0.25
CLN3-217ENST00000565354 OR6C1Q96RD1 312 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 EGFL8Q99944 293 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 ACAT2Q9BWD1 397 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 PARD6BQ9BYG5 372 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 SNX15Q9NRS6 342 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 SEMA5BQ9P283 1151 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 ZNF180Q9UJW8 692 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 NOVA2Q9UNW9 492 aaKnown RBP16.61■□□□□ 0.25
CLN3-217ENST00000565354 ACOT9Q9Y305 439 aa16.61■□□□□ 0.25
CLN3-217ENST00000565354 UNC79Q9P2D8 2635 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 ICE1Q9Y2F5 2266 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 STMND1H3BQB6 276 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 CCNDBP1O95273 360 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 FKBP9O95302 570 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 TUBBP07437 444 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 SNRPAP09012 282 aaKnown RBP16.6■□□□□ 0.25
CLN3-217ENST00000565354 EBLN1P0CF75 366 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 ERGP11308 486 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 CMPK1P30085 196 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 POLE2P56282 527 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 SH3BP2P78314 561 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 KCNAB2Q13303 367 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 TUBB3Q13509 450 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 KCNAB1Q14722 419 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 TSNQ15631 228 aaKnown RBP16.6■□□□□ 0.25
CLN3-217ENST00000565354 PHKG1Q16816 387 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 EMBQ6PCB8 327 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 RASGRP3Q8IV61 690 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 SPATA6LQ8N4H0 392 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 C19orf47Q8N9M1 422 aaKnown RBP16.6■□□□□ 0.25
CLN3-217ENST00000565354 DCAKDQ8WVC6 231 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 ATL1Q8WXF7 558 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 DLG3Q92796 817 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 SLC41A2Q96JW4 573 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 TSNARE1Q96NA8 513 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 TRAPPC9Q96Q05 1148 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 MIPEPQ99797 713 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 CTRCQ99895 268 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 PITPNM3Q9BZ71 974 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 ASPSCR1Q9BZE9 553 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 VPS11Q9H270 941 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 CCDC177Q9NQR7 707 aaPredicted RBP16.6■□□□□ 0.25
CLN3-217ENST00000565354 STOX2Q9P2F5 926 aaPredicted RBP16.6■□□□□ 0.25
CLN3-217ENST00000565354 TUBD1Q9UJT1 453 aa16.6■□□□□ 0.25
CLN3-217ENST00000565354 A0A096LPK6 155 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 IQANK1A0A1B0GTG1 560 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 TRIM49D1C9J1S8 452 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 S100BP04271 92 aaPredicted RBP16.59■□□□□ 0.25
CLN3-217ENST00000565354 ANXA5P08758 320 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 LTA4HP09960 611 aaKnown RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 122.8 ms