RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 PCMTD2Q9NV79 361 aa12.87□□□□□ -0.35
CLK3-216ENST00000564468 A0A1W2PPV9 198 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 C9J4A7 227 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 E7ENX8 843 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 NKX2-8O15522 239 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 SLC16A8O95907 504 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 PRKAR1AP10644 381 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 FDXRP22570 491 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 F8A1P23610 371 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 SSTR1P30872 391 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 RORAP35398 523 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 CCR10P46092 362 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 SLC12A2P55011 1212 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 TIAL1Q01085 375 aaKnown RBP eCLIP12.86□□□□□ -0.35
CLK3-216ENST00000564468 TAP2Q03519 686 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 PRDX1Q06830 199 aaKnown RBP12.86□□□□□ -0.35
CLK3-216ENST00000564468 TBR1Q16650 682 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 FAM214AQ32MH5 1076 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 THEMIS2Q5TEJ8 643 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 PRAMEF17Q5VTA0 474 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 FCRL6Q6DN72 434 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 FAM199XQ6PEV8 388 aaPredicted RBP12.86□□□□□ -0.35
CLK3-216ENST00000564468 C3orf62Q6ZUJ4 267 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 SYVN1Q86TM6 617 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 ZC3HC1Q86WB0 502 aaKnown RBP12.86□□□□□ -0.35
CLK3-216ENST00000564468 CCDC25Q86WR0 208 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 FAM20CQ8IXL6 584 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 MMGT1Q8N4V1 131 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 NKAPQ8N5F7 415 aaKnown RBP12.86□□□□□ -0.35
CLK3-216ENST00000564468 SLC38A9Q8NBW4 561 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 ZNF480Q8WV37 535 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 LINGO1Q96FE5 620 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 PDLIM5Q96HC4 596 aaKnown RBP12.86□□□□□ -0.35
CLK3-216ENST00000564468 ACAT2Q9BWD1 397 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 NLNQ9BYT8 704 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 FAM129AQ9BZQ8 928 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 SPRTNQ9H040 489 aaPredicted RBP12.86□□□□□ -0.35
CLK3-216ENST00000564468 PCBD2Q9H0N5 130 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 TSPYL1Q9H0U9 437 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 CHST8Q9H2A9 424 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 RHOJQ9H4E5 214 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 SLC17A6Q9P2U8 582 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 POLHQ9Y253 713 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 PADI2Q9Y2J8 665 aa12.86□□□□□ -0.35
CLK3-216ENST00000564468 HEMK1Q9Y5R4 338 aaPredicted RBP12.86□□□□□ -0.35
CLK3-216ENST00000564468 FAM95CA0A1B0GW59 222 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 CTAGE15A4D2H0 777 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 KRT87PA6NCN2 255 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 H3BMH7 237 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 CTAGE8P0CG41 777 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 PIM1P11309 404 aaPredicted RBP12.85□□□□□ -0.35
CLK3-216ENST00000564468 CCND1P24385 295 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 HRH2P25021 359 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 PSMB5P28074 263 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 MAGEA4P43358 317 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 CSRP3P50461 194 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 AP1S2P56377 157 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 ERV3-1Q14264 604 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 GRM7Q14831 915 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 GLE1Q53GS7 698 aaKnown RBP12.85□□□□□ -0.35
CLK3-216ENST00000564468 ICE2Q659A1 982 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 SUSD1Q6UWL2 747 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 CAPN12Q6ZSI9 719 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 CTAGE6Q86UF2 777 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 CTAGE4Q8IX94 777 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 ZNF655Q8N720 491 aaPredicted RBP12.85□□□□□ -0.35
CLK3-216ENST00000564468 TTC29Q8NA56 475 aaPredicted RBP12.85□□□□□ -0.35
CLK3-216ENST00000564468 APOBEC4Q8WW27 367 aaKnown RBP12.85□□□□□ -0.35
CLK3-216ENST00000564468 ANKRD7Q92527 254 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 TSPAN17Q96FV3 270 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 CPNE1Q99829 537 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 SELENOSQ9BQE4 189 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 LRRC1Q9BTT6 524 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 DPH7Q9BTV6 452 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 DHRS4Q9BTZ2 278 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 ADNPQ9H2P0 1102 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 ACTL8Q9H568 366 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 AKIRIN1Q9H9L7 192 aaPredicted RBP12.85□□□□□ -0.35
CLK3-216ENST00000564468 POPDC3Q9HBV1 291 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 CCDC177Q9NQR7 707 aaPredicted RBP12.85□□□□□ -0.35
CLK3-216ENST00000564468 ENAMQ9NRM1 1142 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 MTRF1LQ9UGC7 380 aaKnown RBP12.85□□□□□ -0.35
CLK3-216ENST00000564468 GPN3Q9UHW5 284 aaPredicted RBP12.85□□□□□ -0.35
CLK3-216ENST00000564468 SNX7Q9UNH6 387 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 PDE10AQ9Y233 779 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 KLHL20Q9Y2M5 609 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 MRPS18BQ9Y676 258 aaKnown RBP12.85□□□□□ -0.35
CLK3-216ENST00000564468 COL12A1Q99715 3063 aa12.85□□□□□ -0.35
CLK3-216ENST00000564468 OR2A25A4D2G3 310 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 ENO2P09104 434 aaPredicted RBP12.84□□□□□ -0.35
CLK3-216ENST00000564468 SAT1P21673 171 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 IMPA1P29218 277 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 STX2P32856 288 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 DCDP81605 110 aaKnown RBP12.84□□□□□ -0.35
CLK3-216ENST00000564468 SLC7A5Q01650 507 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 POU4F1Q01851 419 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 GUCY2DQ02846 1103 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 RELAQ04206 551 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 PTCHD3Q3KNS1 767 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 LINC00303Q3SY05 128 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms