RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	ARNT	P27540	789 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	HCAR3	P49019	387 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	POLR2J	P52435	117 aa	Known RBP	10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	CDH13	P55290	713 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	SH3BP2	P78314	561 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	GPLD1	P80108	840 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	SEMA3B	Q13214	749 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	RAPSN	Q13702	412 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	DGCR6	Q14129	220 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	PLA2G4E	Q3MJ16	856 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	TBRG1	Q3YBR2	411 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	PARP15	Q460N3	678 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	DENND5A	Q6IQ26	1287 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	SPESP1	Q6UW49	350 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	OTOP3	Q7RTS5	596 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	NLGN4X	Q8N0W4	816 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	NETO2	Q8NC67	525 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	BLOC1S5	Q8TDH9	187 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	ZFYVE19	Q96K21	471 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	TEKT5	Q96M29	485 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	PHOX2B	Q99453	314 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	APOL2	Q9BQE5	337 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	CDADC1	Q9BWV3	514 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	ZNF717	Q9BY31	904 aa	Predicted RBP	10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	LMAN2L	Q9H0V9	348 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	IGFLR1	Q9H665	355 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	LTB4R2	Q9NPC1	389 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	GKN1	Q9NS71	199 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	DPP7	Q9UHL4	492 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	NUP50	Q9UKX7	468 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	LYVE1	Q9Y5Y7	322 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	HS3ST4	Q9Y661	456 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	MYOF	Q9NZM1	2061 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	OR5K3	A6NET4	321 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228		H3BMM5	538 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	IFRD1	O00458	451 aa	Predicted RBP	10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	NRG2	O14511	850 aa	Predicted RBP	10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	SLC22A3	O75751	556 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	FADS2	O95864	444 aa	Known RBP	10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	IGLV3-27	P01718	113 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	CYBB	P04839	570 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	PCNA	P12004	261 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	ERCC2	P18074	760 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	IL1RN	P18510	177 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	DCT	P40126	519 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	HTR2B	P41595	481 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	CCR2	P41597	374 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	CTSK	P43235	329 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	SLC15A1	P46059	708 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	ZNF135	P52742	658 aa	Predicted RBP	10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	CSNK2B	P67870	215 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	SMAD3	P84022	425 aa	Known RBP	10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	DUSP6	Q16828	381 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	SPANXN2	Q5MJ10	180 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	PIK3R6	Q5UE93	754 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	ZNF767P	Q75MW2	155 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	RAB44	Q7Z6P3	723 aa	Predicted RBP	10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	CCDC190	Q86UF4	302 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	PLCZ1	Q86YW0	608 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	MICU2	Q8IYU8	434 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	CADM2	Q8N3J6	435 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	ZFAND1	Q8TCF1	268 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	TBC1D20	Q96BZ9	403 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	SLC47A1	Q96FL8	570 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	AIFM2	Q9BRQ8	373 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	TRAF4	Q9BUZ4	470 aa	Predicted RBP	10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	NUSAP1	Q9BXS6	441 aa	Known RBP	10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	PRKD2	Q9BZL6	878 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	INTS7	Q9NVH2	962 aa	Known RBP	10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	PNMA8B	Q9ULN7	279 aa	Predicted RBP	10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	USP22	Q9UPT9	525 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	BTRC	Q9Y297	605 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	AAR2	Q9Y312	384 aa	Known RBP	10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	PCDHB14	Q9Y5E9	798 aa		10.78	□□□□□ -0.68
TCF4-222	ENST00000564228	C5orf42	Q9H799	3197 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228		A0A0G2JMP0	313 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228		C9JVG2	144 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	ARNTL	O00327	626 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	GNGT2	O14610	69 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	SCAMP3	O14828	347 aa	Known RBP	10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	DSCR3	O14972	297 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	STC2	O76061	302 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	CKM	P06732	381 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	RHO	P08100	348 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	HNRNPA1	P09651	372 aa	Known RBP eCLIP	10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	FSHR	P23945	695 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	HOXA9	P31269	272 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	FMO3	P31513	532 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	ETV3	P41162	512 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	HNF4A	P41235	474 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	NTHL1	P78549	312 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	TAGLN	Q01995	201 aa	Known RBP	10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	RING1	Q06587	406 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	ZNF33A	Q06730	810 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	C5orf22	Q49AR2	442 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	MS4A13	Q5J8X5	152 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	RBM20	Q5T481	1227 aa	Known RBP	10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	RAP1GAP2	Q684P5	730 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	TXNDC11	Q6PKC3	985 aa		10.77	□□□□□ -0.69
TCF4-222	ENST00000564228	RTL10	Q7L3V2	364 aa		10.77	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms