RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 CST1P01037 141 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 AHSGP02765 367 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 HLA-DQB2P05538 268 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 CCNYL3P0C7X3 344 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 ACRP10323 421 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 EN2P19622 333 aaPredicted RBP12.95□□□□□ -0.34
CLK3-206ENST00000562078 NMBRP28336 390 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 CSTF2P33240 577 aaKnown RBP eCLIP12.95□□□□□ -0.34
CLK3-206ENST00000562078 NPY2RP49146 381 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 GZMKP49863 264 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 TBX4P57082 545 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 DNAJB13P59910 316 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 COL19A1Q14993 1142 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 NKG7Q16617 165 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 AAK1Q2M2I8 961 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 ZMAT1Q5H9K5 638 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 LAMTOR1Q6IAA8 161 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 KIAA1324Q6UXG2 1013 aaKnown RBP12.95□□□□□ -0.34
CLK3-206ENST00000562078 MIB1Q86YT6 1006 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 DTWD1Q8N5C7 304 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 FBXO32Q969P5 355 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 SEPT5Q99719 369 aaPredicted RBP12.95□□□□□ -0.34
CLK3-206ENST00000562078 RBM4BQ9BQ04 359 aaKnown RBP12.95□□□□□ -0.34
CLK3-206ENST00000562078 TRAF4Q9BUZ4 470 aaPredicted RBP12.95□□□□□ -0.34
CLK3-206ENST00000562078 RBM4Q9BWF3 364 aaKnown RBP12.95□□□□□ -0.34
CLK3-206ENST00000562078 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.95□□□□□ -0.34
CLK3-206ENST00000562078 RHOJQ9H4E5 214 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 GLOD4Q9HC38 313 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 SLC52A3Q9NQ40 469 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 MARCH5Q9NX47 278 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 B3GNT2Q9NY97 397 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 ATP6V1HQ9UI12 483 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 RNF6Q9Y252 685 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 PEX16Q9Y5Y5 336 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 LYVE1Q9Y5Y7 322 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 CHD5Q8TDI0 1954 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 ABHD14A-ACY1A0A1B0GW23 586 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 A8MT66 165 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 PPP6CO00743 305 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 GNGT2O14610 69 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 MATN3O15232 486 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 RECQL5O94762 991 aaPredicted RBP12.95□□□□□ -0.34
CLK3-206ENST00000562078 ZNF30P17039 623 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 CA5AP35218 305 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 MAGEA11P43364 429 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 CHRNB3Q05901 458 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 SIM2Q14190 667 aaPredicted RBP12.95□□□□□ -0.34
CLK3-206ENST00000562078 FAM98BQ52LJ0 330 aaKnown RBP12.95□□□□□ -0.34
CLK3-206ENST00000562078 IGSF11Q5DX21 431 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 SPOUT1Q5T280 376 aaKnown RBP12.95□□□□□ -0.34
CLK3-206ENST00000562078 ENPP6Q6UWR7 440 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 ARSKQ6UWY0 536 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 ANKS3Q6ZW76 656 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 CREB3L2Q70SY1 520 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 TMCO2Q7Z6W1 182 aaPredicted RBP12.95□□□□□ -0.34
CLK3-206ENST00000562078 CCDC190Q86UF4 302 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 VWCEQ96DN2 955 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 TEX37Q96LM6 180 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 KCNS3Q9BQ31 491 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 TBL1YQ9BQ87 522 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 FICDQ9BVA6 458 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 ITPAQ9BY32 194 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 CRISPLD1Q9H336 500 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 MUTYHQ9UIF7 546 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 C3orf18Q9UK00 162 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 KCNE2Q9Y6J6 123 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 A3GALT2U3KPV4 340 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 U3KQV3 271 aa12.95□□□□□ -0.34
CLK3-206ENST00000562078 PNMA8CA0A1B0GUJ8 204 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 CACNG3O60359 315 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 UGT2B17O75795 530 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 GALTP07902 379 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 JUNDP17535 347 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 AZGP1P25311 298 aaKnown RBP12.94□□□□□ -0.34
CLK3-206ENST00000562078 ETV1P50549 477 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 UGT2B15P54855 530 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 RAB10P61026 200 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 BNC1Q01954 994 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 FOXM1Q08050 763 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 TNK1Q13470 666 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 CSHL1Q14406 222 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 GBX1Q14549 363 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 BAK1Q16611 211 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 BLOC1S3Q6QNY0 202 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 PROSER1Q86XN7 944 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 DENND6AQ8IWF6 608 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 FBXW5Q969U6 566 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 PDLIM5Q96HC4 596 aaKnown RBP12.94□□□□□ -0.34
CLK3-206ENST00000562078 APOL4Q9BPW4 351 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 TMEM175Q9BSA9 504 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 ZC4H2Q9NQZ6 224 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 USE1Q9NZ43 259 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 PRKAG2Q9UGJ0 569 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 AAR2Q9Y312 384 aaKnown RBP12.94□□□□□ -0.34
CLK3-206ENST00000562078 PCDHGB2Q9Y5G2 931 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 SNX8Q9Y5X2 465 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 ALPK3Q96L96 1907 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 ARPC4-TTLL3A0A0A6YYG9 625 aa12.94□□□□□ -0.34
CLK3-206ENST00000562078 TYW5A2RUC4 315 aaKnown RBP12.94□□□□□ -0.34
CLK3-206ENST00000562078 MTMR11A4FU01 709 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms