RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 KLC3Q6P597 504 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 FIGLAQ6QHK4 219 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 SUSD1Q6UWL2 747 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 LCTLQ6UWM7 567 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 RNF44Q7L0R7 432 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 DNAJC22Q8N4W6 341 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 ESX1Q8N693 406 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 PPFIBP2Q8ND30 876 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 RHEBL1Q8TAI7 183 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 UHMK1Q8TAS1 419 aaKnown RBP12.5□□□□□ -0.41
NEDD8-208ENST00000560427 AENQ8WTP8 325 aaKnown RBP12.5□□□□□ -0.41
NEDD8-208ENST00000560427 UBLCP1Q8WVY7 318 aaPredicted RBP12.5□□□□□ -0.41
NEDD8-208ENST00000560427 N4BP2L2Q92802 583 aaPredicted RBP12.5□□□□□ -0.41
NEDD8-208ENST00000560427 CAVIN3Q969G5 261 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 MED8Q96G25 268 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 CABS1Q96KC9 395 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 LRFN5Q96NI6 719 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 CTRCQ99895 268 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 ULBP3Q9BZM4 244 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 SPRY4Q9C004 299 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 FAM60AQ9NP50 221 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 PSMC3IPQ9P2W1 217 aaPredicted RBP12.5□□□□□ -0.41
NEDD8-208ENST00000560427 SNX7Q9UNH6 387 aa12.5□□□□□ -0.41
NEDD8-208ENST00000560427 ACACAQ13085 2346 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 SYCE1LA8MT33 242 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 TMEM150CB9EJG8 249 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 E7EQ34 232 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 CPNE3O75131 537 aaKnown RBP12.49□□□□□ -0.41
NEDD8-208ENST00000560427 SCRG1O75711 98 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 IPO13O94829 963 aaKnown RBP12.49□□□□□ -0.41
NEDD8-208ENST00000560427 GUCA1CO95843 209 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 HBQ1P09105 142 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 EZRP15311 586 aaKnown RBP12.49□□□□□ -0.41
NEDD8-208ENST00000560427 GABRA4P48169 554 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 UCNP55089 124 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 NAE1Q13564 534 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 TSTA3Q13630 321 aaPredicted RBP12.49□□□□□ -0.41
NEDD8-208ENST00000560427 ACAP2Q15057 778 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 ST3GAL2Q16842 350 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 ERCC6LQ2NKX8 1250 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 TSNAXIP1Q2TAA8 658 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 TCTE1Q5JU00 501 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 FCRL6Q6DN72 434 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 ZNF425Q6IV72 752 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 PWWP2BQ6NUJ5 590 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 TLDC1Q6P9B6 456 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 MBOAT1Q6ZNC8 495 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 TIFABQ6ZNK6 161 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 LCA5Q86VQ0 697 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 TDRPQ86YL5 185 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 GPSM1Q86YR5 675 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 TMEM126BQ8IUX1 230 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 KLHDC8AQ8IYD2 350 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 GPR135Q8IZ08 494 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 CENPLQ8N0S6 344 aaPredicted RBP12.49□□□□□ -0.41
NEDD8-208ENST00000560427 NLGN4XQ8N0W4 816 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 PDPRQ8NCN5 879 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 NLGN4YQ8NFZ3 816 aaPredicted RBP12.49□□□□□ -0.41
NEDD8-208ENST00000560427 EGFL8Q99944 293 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 PLCD4Q9BRC7 762 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 DPH7Q9BTV6 452 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 ACAT2Q9BWD1 397 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 FAM117AQ9C073 453 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 KLHL25Q9H0H3 589 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 CNOT10Q9H9A5 744 aaKnown RBP12.49□□□□□ -0.41
NEDD8-208ENST00000560427 SLC6A20Q9NP91 592 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 IGSF5Q9NSI5 407 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 EURLQ9NYK6 297 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 NUDT4Q9NZJ9 180 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 PILRAQ9UKJ1 303 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 RAB21Q9UL25 225 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 SRPK3Q9UPE1 567 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 SSUH2Q9Y2M2 353 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 AP1M2Q9Y6Q5 423 aa12.49□□□□□ -0.41
NEDD8-208ENST00000560427 WDFY3Q8IZQ1 3526 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 SRRM3A6NNA2 597 aaPredicted RBP12.48□□□□□ -0.41
NEDD8-208ENST00000560427 TRIM49D1C9J1S8 452 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 H3BMH7 237 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 RAD1O60671 282 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 SRPX2O60687 465 aaPredicted RBP12.48□□□□□ -0.41
NEDD8-208ENST00000560427 OR2B3O76000 313 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 KIAA0754O94854 1291 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 KLHL2O95198 593 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 S100BP04271 92 aaPredicted RBP12.48□□□□□ -0.41
NEDD8-208ENST00000560427 NUDT17P0C025 328 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 TFEBP19484 476 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 GCAP28676 217 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 GGT5P36269 586 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 HSD17B3P37058 310 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 ABHD18Q0P651 414 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 DLG1Q12959 904 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 CLN3Q13286 438 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 YOD1Q5VVQ6 348 aaPredicted RBP12.48□□□□□ -0.41
NEDD8-208ENST00000560427 BROXQ5VW32 411 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 SULT1C3Q6IMI6 304 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 ISCA2Q86U28 154 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 PAQR7Q86WK9 346 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 C17orf64Q86WR6 236 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 ZFAND4Q86XD8 727 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 FAM20CQ8IXL6 584 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms