RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 C9orf16Q9BUW7 83 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 REXO4Q9GZR2 422 aaKnown RBP10.29□□□□□ -0.76
CUX1-217ENST00000558836 ZNF696Q9H7X3 374 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 SGK2Q9HBY8 427 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 KLHL42Q9P2K6 505 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 VPS4AQ9UN37 437 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 CFAP20Q9Y6A4 193 aaKnown RBP10.29□□□□□ -0.76
CUX1-217ENST00000558836 SLC5A10A0PJK1 596 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 H3BSA7 217 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 CXCR6O00574 342 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 KPNA5O15131 536 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 CLOCKO15516 846 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 NOBOXO60393 691 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 PSIP1O75475 530 aaKnown RBP10.29□□□□□ -0.76
CUX1-217ENST00000558836 H6PDO95479 791 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 PRKACGP22612 351 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 HOXA9P31269 272 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 C16orf72Q14CZ0 275 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 LAPTM4AQ15012 233 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 LDLRAP1Q5SW96 308 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 INTS11Q5TA45 600 aaKnown RBP10.29□□□□□ -0.76
CUX1-217ENST00000558836 ZNF621Q6ZSS3 439 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 STK32CQ86UX6 486 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 GPR180Q86V85 440 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 RIMKLAQ8IXN7 391 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 ETFBKMTQ8IXQ9 262 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 TRIML2Q8N7C3 387 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 ZNF557Q8N988 423 aaPredicted RBP10.29□□□□□ -0.76
CUX1-217ENST00000558836 HERVK_113Q902F9 699 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 TMBIM1Q969X1 311 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 DTD2Q96FN9 168 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 IL17FQ96PD4 163 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 DPH2Q9BQC3 489 aaPredicted RBP10.29□□□□□ -0.76
CUX1-217ENST00000558836 ACAT2Q9BWD1 397 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 ANKRD60Q9BZ19 345 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 KAT8Q9H7Z6 458 aaKnown RBP10.29□□□□□ -0.76
CUX1-217ENST00000558836 BRWD1Q9NSI6 2320 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 CXorf51AA0A1B0GTR3 108 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 TSPAN11A1L157 253 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 RFXANKO14593 260 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 NPC1O15118 1278 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 EPHX1P07099 455 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 SRPRAP08240 638 aaKnown RBP10.29□□□□□ -0.76
CUX1-217ENST00000558836 CDH1P12830 882 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 RPS9P46781 194 aaKnown RBP10.29□□□□□ -0.76
CUX1-217ENST00000558836 PRLHRP49683 370 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 IRX1P78414 480 aaPredicted RBP10.29□□□□□ -0.76
CUX1-217ENST00000558836 CHRNB3Q05901 458 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 GAB4Q2WGN9 574 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 TMTC4Q5T4D3 741 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 TANGO2Q6ICL3 276 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 FAM180BQ6P0A1 224 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 ZNF547Q8IVP9 402 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 ZNF480Q8WV37 535 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 FBXL8Q96CD0 374 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 CMTM7Q96FZ5 175 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 RMND5BQ96G75 393 aaPredicted RBP10.29□□□□□ -0.76
CUX1-217ENST00000558836 HIC2Q96JB3 615 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 ASB16Q96NS5 453 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 FAM129BQ96TA1 746 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 SMURF2Q9HAU4 748 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 TM7SF3Q9NS93 570 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 ATXN10Q9UBB4 475 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 VPS29Q9UBQ0 182 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 PCM1Q15154 2024 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 EIF3FO00303 357 aaPredicted RBP10.28□□□□□ -0.76
CUX1-217ENST00000558836 UPK1AO00322 258 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 VILLO15195 856 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 B4GAT1O43505 415 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 AP2A2O94973 939 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 RASAL1O95294 804 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 SERPINA1P01009 418 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 CATP04040 527 aaKnown RBP10.28□□□□□ -0.76
CUX1-217ENST00000558836 ADRB3P13945 408 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 IL12RB1P42701 662 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 SP140Q13342 867 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 FXNQ16595 210 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 HKDC1Q2TB90 917 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 HNRNPA1L2Q32P51 320 aaKnown RBP10.28□□□□□ -0.76
CUX1-217ENST00000558836 FAM98BQ52LJ0 330 aaKnown RBP10.28□□□□□ -0.76
CUX1-217ENST00000558836 METTL2BQ6P1Q9 378 aaKnown RBP10.28□□□□□ -0.76
CUX1-217ENST00000558836 SPRED1Q7Z699 444 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 C1orf52Q8N6N3 182 aaKnown RBP10.28□□□□□ -0.76
CUX1-217ENST00000558836 LEMD2Q8NC56 503 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 HUS1BQ8NHY5 278 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 TIFAQ96CG3 184 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 NUS1Q96E22 293 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 FAM120BQ96EK7 910 aaKnown RBP10.28□□□□□ -0.76
CUX1-217ENST00000558836 PANX1Q96RD7 426 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 DKK3Q9UBP4 350 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 MYRFQ9Y2G1 1151 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 FADS3Q9Y5Q0 445 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 PLXNA2O75051 1894 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 PRR23AA6NEV1 266 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 H0YJX3 145 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 H3BNH8 94 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 RFXAPO00287 272 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 GNGT2O14610 69 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 SLC16A5O15375 505 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 PRNPP04156 253 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms