RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 RNF168Q8IYW5 571 aaPredicted RBP12.51□□□□□ -0.41
LDLR-207ENST00000558013 TMEM132CQ8N3T6 1108 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 FAR1Q8WVX9 515 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 RDH14Q9HBH5 336 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 PRM3Q9NNZ6 103 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 ZNF510Q9Y2H8 683 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 FAM220BPB1ANY3 271 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 SERPINA4P29622 427 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 RAD23AP54725 363 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 VBP1P61758 197 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 CHIT1Q13231 466 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 UGT8Q16880 541 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 TTLL9Q3SXZ7 439 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 CCDC71Q8IV32 467 aaPredicted RBP12.51□□□□□ -0.41
LDLR-207ENST00000558013 ASB11Q8WXH4 323 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 NRBF2Q96F24 287 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 SCRN2Q96FV2 425 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 MTG2Q9H4K7 406 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 GPN2Q9H9Y4 310 aaPredicted RBP12.51□□□□□ -0.41
LDLR-207ENST00000558013 ZDHHC3Q9NYG2 299 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 CCL26Q9Y258 94 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 INSL5Q9Y5Q6 135 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 AGAP14A8MT82 685 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 CLIC1O00299 241 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 KCNK5O95279 499 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 FKBP9O95302 570 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 NTRK1P04629 796 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 OCM2P0CE71 109 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 OCMP0CE72 109 aaPredicted RBP12.51□□□□□ -0.41
LDLR-207ENST00000558013 LAMP1P11279 417 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 AMD1P17707 334 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 ADPRMQ3LIE5 342 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 GPR33Q49SQ1 333 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 FKBP9P1Q75LS8 142 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 PIK3C3Q8NEB9 887 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 RPL3LQ92901 407 aaKnown RBP12.51□□□□□ -0.41
LDLR-207ENST00000558013 TRMT2BQ96GJ1 504 aaKnown RBP12.51□□□□□ -0.41
LDLR-207ENST00000558013 B4GALT6Q9UBX8 382 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 FPGTO14772 594 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 NDUFS2O75306 463 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 ETHE1O95571 254 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 IGSF6O95976 241 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 C1SP09871 688 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 TNFRSF1BP20333 461 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 KIR3DL1P43629 444 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 MASP1P48740 699 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 WNT3P56703 355 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 ABRQ12979 859 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 PERM1Q5SV97 790 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 TMEM236Q5W0B7 351 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 PDE12Q6L8Q7 609 aaKnown RBP12.5□□□□□ -0.41
LDLR-207ENST00000558013 Q6ZVU0 165 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 REXO5Q96IC2 774 aaKnown RBP12.5□□□□□ -0.41
LDLR-207ENST00000558013 TPD52L3Q96J77 140 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 COX4I2Q96KJ9 171 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 SLC12A9Q9BXP2 914 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 AMBNQ9NP70 447 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 SELENONQ9NZV5 590 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 PDP1Q9P0J1 537 aaPredicted RBP12.5□□□□□ -0.41
LDLR-207ENST00000558013 MAN2B2Q9Y2E5 1009 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 COQ6Q9Y2Z9 468 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 SNX5Q9Y5X3 404 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.5□□□□□ -0.41
LDLR-207ENST00000558013 A0A1W2PRU2 124 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 HOXA9P31269 272 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 CRYBA2P53672 197 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 PHEXP78562 749 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 TUBA3CQ13748 450 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 NPTX1Q15818 432 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 FRG2Q64ET8 278 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 TPRG1Q6ZUI0 275 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 PTOV1Q86YD1 416 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 TERB1Q8NA31 727 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 ZFP90Q8TF47 636 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 SH3KBP1Q96B97 665 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 CNDP2Q96KP4 475 aaKnown RBP12.5□□□□□ -0.41
LDLR-207ENST00000558013 RDH12Q96NR8 316 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 FRG2BQ96QU4 278 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 SLC29A3Q9BZD2 475 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 BRD9Q9H8M2 597 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 ASIC5Q9NY37 505 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 ENPP5Q9UJA9 477 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 SNX6Q9UNH7 406 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 PCDHGA10Q9Y5H3 936 aa12.5□□□□□ -0.41
LDLR-207ENST00000558013 SCN2BO60939 215 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 FADS2O95864 444 aaKnown RBP12.49□□□□□ -0.41
LDLR-207ENST00000558013 GBAP04062 536 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 SOD2P04179 222 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 HIST1H2AGP0C0S8 130 aaPredicted RBP12.49□□□□□ -0.41
LDLR-207ENST00000558013 ACPPP15309 386 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 HIST1H2ADP20671 130 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 FUT4P22083 530 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 PFN3P60673 137 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 ABHD18Q0P651 414 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 CYP27C1Q4G0S4 372 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 EGFLAMQ63HQ2 1017 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 OR2T5Q6IEZ7 315 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 SYT12Q8IV01 421 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 TMCO5AQ8N6Q1 288 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 OR2T29Q8NH02 315 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms