RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	DNAJC15	Q9Y5T4	150 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	TRAV6	A0A075B6T7	132 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLC30A4	O14863	429 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	AP1G1	O43747	822 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	STATH	P02808	62 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	ALDH2	P05091	517 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	RPS3	P23396	243 aa	Known RBP eCLIP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	PSMA1	P25786	263 aa	Known RBP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	CLCN4	P51793	760 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	BMX	P51813	675 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	MAZ	P56270	477 aa	Known RBP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF691	Q5VV52	312 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	SHQ1	Q6PI26	577 aa	Known RBP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	TBPL2	Q6SJ96	375 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	MTSS1L	Q765P7	747 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	FAM129C	Q86XR2	697 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	TRAPPC5	Q8IUR0	188 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	OR8J3	Q8NGG0	315 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	GATAD2B	Q8WXI9	593 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	FERD3L	Q96RJ6	166 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	MTERF1	Q99551	399 aa	Known RBP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	TMEM246	Q9BRR3	403 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	DUSP26	Q9BV47	211 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	KLHL31	Q9H511	634 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	ELAC1	Q9H777	363 aa	Known RBP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	CRTAC1	Q9NQ79	661 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	FARSB	Q9NSD9	589 aa	Known RBP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	AHSP	Q9NZD4	102 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	POFUT2	Q9Y2G5	429 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	ARHGEF33	A8MVX0	844 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	ADAMDEC1	O15204	470 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	GBA	P04062	536 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	LCK	P06239	509 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	BMP4	P12644	408 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	TNFRSF1B	P20333	461 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	STAR	P49675	285 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	CDKN1C	P49918	316 aa	Predicted RBP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	AP2S1	P53680	142 aa	Predicted RBP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	MAPK12	P53778	367 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	CDH4	P55283	916 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	INHBE	P58166	350 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	CHIT1	Q13231	466 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF267	Q14586	743 aa	Predicted RBP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	TIGD5	Q53EQ6	642 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	MS4A13	Q5J8X5	152 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	TUBA3E	Q6PEY2	450 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	BORA	Q6PGQ7	559 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	PLET1	Q6UQ28	207 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	HMGN2P46	Q86SG4	172 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	SPNS2	Q8IVW8	549 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLCO4A1	Q96BD0	722 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	TADA1	Q96BN2	335 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	PYCR2	Q96C36	320 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	TSPAN18	Q96SJ8	248 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	GINS4	Q9BRT9	223 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	TSSK6	Q9BXA6	273 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	C1QTNF1	Q9BXJ1	281 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	NECTIN3	Q9NQS3	549 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	GJD2	Q9UKL4	321 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF214	Q9UL59	606 aa	Predicted RBP	4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005	PLAGL1	Q9UM63	463 aa		4.86	□□□□□ -1.63
SYNE2-223	ENST00000557005		A0A0D9SEW6	157 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	SMLR1	H3BR10	107 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CLIC1	O00299	241 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	PRMT5	O14744	637 aa	Predicted RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ORC5	O43913	435 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	SERPINB7	O75635	380 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	STK16	O75716	305 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CRYZL1	O95825	349 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	STS	P08842	583 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CHRNB1	P11230	501 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	KCNA5	P22460	613 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CSK	P41240	450 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CASP3	P42574	277 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF45	Q02386	682 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CREM	Q03060	361 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ARHGAP1	Q07960	439 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	UGT8	Q16880	541 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CYBRD1	Q53TN4	286 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	HECTD3	Q5T447	861 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	GTF2IRD2B	Q6EKJ0	949 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	SMARCD3	Q6STE5	483 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CCBE1	Q6UXH8	406 aa	Predicted RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	GTF2IRD2	Q86UP8	949 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	MFSD6L	Q8IWD5	586 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ADGRG5	Q8IZF4	528 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLC9A6	Q92581	669 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	AKAP1	Q92667	903 aa	Known RBP eCLIP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CCDC120	Q96HB5	630 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF607	Q96SK3	696 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	NPY6R	Q99463	290 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	YIPF4	Q9BSR8	244 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CD244	Q9BZW8	370 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CXCL16	Q9H2A7	254 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	PRDM8	Q9NQV8	689 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CTPS2	Q9NRF8	586 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	OLAH	Q9NV23	265 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ITM2B	Q9Y287	266 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	MAN2B2	Q9Y2E5	1009 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	BTAF1	O14981	1849 aa		4.85	□□□□□ -1.63

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