RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 CNTNAP3Q9BZ76 1288 aa16.82■□□□□ 0.28
SHMT2-225ENST00000556798 MRPS30Q9NP92 439 aaKnown RBP16.82■□□□□ 0.28
SHMT2-225ENST00000556798 PCMTD2Q9NV79 361 aa16.82■□□□□ 0.28
SHMT2-225ENST00000556798 INTS7Q9NVH2 962 aaKnown RBP16.82■□□□□ 0.28
SHMT2-225ENST00000556798 ZNF358Q9NW07 568 aa16.82■□□□□ 0.28
SHMT2-225ENST00000556798 CUEDC1Q9NWM3 386 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-225ENST00000556798 DKK4Q9UBT3 224 aa16.82■□□□□ 0.28
SHMT2-225ENST00000556798 RARRES3Q9UL19 164 aa16.82■□□□□ 0.28
SHMT2-225ENST00000556798 PCDHGA7Q9Y5G6 932 aa16.82■□□□□ 0.28
SHMT2-225ENST00000556798 PCDHGA3Q9Y5H0 932 aa16.82■□□□□ 0.28
SHMT2-225ENST00000556798 FER1L5A0AVI2 2057 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 IGKV1-8A0A0C4DH67 115 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 SUPT3HB4E1H0 165 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 TMEM150CB9EJG8 249 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 NVLO15381 856 aaKnown RBP16.81■□□□□ 0.28
SHMT2-225ENST00000556798 SUPT3HO75486 399 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 FKBP9O95302 570 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 TIAF1O95411 115 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 TUBBP07437 444 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 NUDT17P0C025 328 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 FAM83EQ2M2I3 478 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 FBXO48Q5FWF7 155 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 CAPN13Q6MZZ7 669 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-225ENST00000556798 ZFAND4Q86XD8 727 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 MREGQ8N565 214 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 OR56A3Q8NH54 315 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 MZB1Q8WU39 189 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 ATL1Q8WXF7 558 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 RHBDF1Q96CC6 855 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 ZNF501Q96CX3 271 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-225ENST00000556798 GPR78Q96P69 363 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 ATOH8Q96SQ7 321 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 DPH7Q9BTV6 452 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 SGPP1Q9BX95 441 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 ASPSCR1Q9BZE9 553 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 FANCEQ9HB96 536 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 CD274Q9NZQ7 290 aa16.81■□□□□ 0.28
SHMT2-225ENST00000556798 GOLGA8RI6L899 631 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 UBXN8O00124 270 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 KERAO60938 352 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 CCNDBP1O95273 360 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 CTSBP07858 339 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 FGF5P12034 268 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 ZNF28P17035 718 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 GABRA4P48169 554 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 PRDX1Q06830 199 aaKnown RBP16.8■□□□□ 0.28
SHMT2-225ENST00000556798 COL9A2Q14055 689 aaPredicted RBP16.8■□□□□ 0.28
SHMT2-225ENST00000556798 IL11RAQ14626 422 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 PTCHD3Q3KNS1 767 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 TIFABQ6ZNK6 161 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 ADCK2Q7Z695 626 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 PPP1R3BQ86XI6 285 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 CYP4X1Q8N118 509 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 DNAJC22Q8N4W6 341 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 OR1L3Q8NH93 324 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 STAG3L4Q8TBR4 150 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 FGF11Q92914 225 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 NAF1Q96HR8 494 aaKnown RBP16.8■□□□□ 0.28
SHMT2-225ENST00000556798 TEFMQ96QE5 360 aaKnown RBP16.8■□□□□ 0.28
SHMT2-225ENST00000556798 OR4K3Q96R72 315 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 TMEM79Q9BSE2 394 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 EURLQ9NYK6 297 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 WWOXQ9NZC7 414 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 CELSR3Q9NYQ7 3312 aa16.8■□□□□ 0.28
SHMT2-225ENST00000556798 DMXL2Q8TDJ6 3036 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 TLDC2A0PJX2 215 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 TAF4O00268 1085 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 TAPBPO15533 448 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 CTSVO60911 334 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 S100BP04271 92 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-225ENST00000556798 CCND1P24385 295 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 GDF5P43026 501 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 PCBP4P57723 403 aaKnown RBP16.79■□□□□ 0.28
SHMT2-225ENST00000556798 IFFO1Q0D2I5 559 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 ACAP2Q15057 778 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 TECRLQ5HYJ1 363 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 PRAMEF17Q5VTA0 474 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 PWWP2BQ6NUJ5 590 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 KLC3Q6P597 504 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 CYB5D1Q6P9G0 228 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 LCTLQ6UWM7 567 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 TDRPQ86YL5 185 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 PDPRQ8NCN5 879 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 N4BP2L2Q92802 583 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-225ENST00000556798 ZUFSPQ96AP4 578 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 ESAMQ96AP7 390 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 SCYL1Q96KG9 808 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 FCRL4Q96PJ5 515 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 ULBP3Q9BZM4 244 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 PCBD2Q9H0N5 130 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 PPCSQ9HAB8 311 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 NUDT4Q9NZJ9 180 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 PLAAQ9Y263 795 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 RAXQ9Y2V3 346 aa16.79■□□□□ 0.28
SHMT2-225ENST00000556798 URB1O60287 2271 aaKnown RBP16.79■□□□□ 0.28
SHMT2-225ENST00000556798 A0A0J9YVX5 310 aa16.78■□□□□ 0.28
SHMT2-225ENST00000556798 TEX51A0A1B0GUA7 166 aa16.78■□□□□ 0.28
SHMT2-225ENST00000556798 A0A1W2PPM1 405 aa16.78■□□□□ 0.28
SHMT2-225ENST00000556798 OR2A25A4D2G3 310 aa16.78■□□□□ 0.28
SHMT2-225ENST00000556798 TMEM8BA6NDV4 472 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms