RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 CCDC138Q96M89 665 aa10.54□□□□□ -0.72
SHMT2-218ENST00000555213 PKP4Q99569 1192 aa10.54□□□□□ -0.72
SHMT2-218ENST00000555213 SEMA6CQ9H3T2 930 aa10.54□□□□□ -0.72
SHMT2-218ENST00000555213 KCNK13Q9HB14 408 aa10.54□□□□□ -0.72
SHMT2-218ENST00000555213 CIDEBQ9UHD4 219 aa10.54□□□□□ -0.72
SHMT2-218ENST00000555213 PDE10AQ9Y233 779 aa10.54□□□□□ -0.72
SHMT2-218ENST00000555213 SPTBN2O15020 2390 aa10.54□□□□□ -0.72
SHMT2-218ENST00000555213 KMT2BQ9UMN6 2715 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-218ENST00000555213 A8MT66 165 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 UBXN8O00124 270 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 ZNF195O14628 629 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 SNX3O60493 162 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 KERAO60938 352 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 CCNDBP1O95273 360 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 FKBP9O95302 570 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 SLC16A8O95907 504 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 SERPINE1P05121 402 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 JMJD7P0C870 316 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 HOXB3P14651 431 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-218ENST00000555213 UGT2B7P16662 529 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 IMPDH1P20839 514 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 CDH3P22223 829 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 CCND1P24385 295 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 NAGLUP54802 743 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 CFHR1Q03591 330 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 TSTA3Q13630 321 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-218ENST00000555213 GRB7Q14451 532 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 CYP2A13Q16696 494 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 PHKG1Q16816 387 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 PPP1R3AQ16821 1122 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 CCSMST1Q4G0I0 132 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 UNC50Q53HI1 259 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 CACHD1Q5VU97 1274 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 FOXR1Q6PIV2 292 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 SPESP1Q6UW49 350 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 FAM47EQ6ZV65 393 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 KMT5CQ86Y97 462 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 ADGRF3Q8IZF5 1079 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 CCDC63Q8NA47 563 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 WDR36Q8NI36 951 aaKnown RBP10.53□□□□□ -0.72
SHMT2-218ENST00000555213 STAG3L4Q8TBR4 150 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 CNTNAP3BQ96NU0 1288 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 IL17FQ96PD4 163 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 EGFL8Q99944 293 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 ELAC2Q9BQ52 826 aaKnown RBP10.53□□□□□ -0.72
SHMT2-218ENST00000555213 SCNM1Q9BWG6 230 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 PITPNM3Q9BZ71 974 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 CNTNAP3Q9BZ76 1288 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 ZNF768Q9H5H4 540 aaKnown RBP10.53□□□□□ -0.72
SHMT2-218ENST00000555213 CCDC177Q9NQR7 707 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-218ENST00000555213 INTS7Q9NVH2 962 aaKnown RBP10.53□□□□□ -0.72
SHMT2-218ENST00000555213 SOHLH2Q9NX45 425 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 UTP6Q9NYH9 597 aaKnown RBP10.53□□□□□ -0.72
SHMT2-218ENST00000555213 TMEM9Q9P0T7 183 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 PDP2Q9P2J9 529 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 ANGPTL2Q9UKU9 493 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 RNF112Q9ULX5 631 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 LOXL2Q9Y4K0 774 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 OARD1Q9Y530 152 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 CACNA1BQ00975 2339 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 RP1P56715 2156 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 ASXL3Q9C0F0 2248 aa10.53□□□□□ -0.72
SHMT2-218ENST00000555213 DMXL1Q9Y485 3027 aa10.52□□□□□ -0.72
SHMT2-218ENST00000555213 A0A0J9YY10 115 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 LRRC14BA6NHZ5 514 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 SYCE1LA8MT33 242 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 A8MU76 341 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 PLD2O14939 933 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 CASC3O15234 703 aaKnown RBP10.52□□□□□ -0.73
SHMT2-218ENST00000555213 TAPBPO15533 448 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 IPO13O94829 963 aaKnown RBP10.52□□□□□ -0.73
SHMT2-218ENST00000555213 TGDSO95455 350 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 ZBTB11O95625 1053 aaPredicted RBP10.52□□□□□ -0.73
SHMT2-218ENST00000555213 GUCA1CO95843 209 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 ANXA5P08758 320 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 TPBGLP0DKB5 382 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 ERGP11308 486 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 GRK2P25098 689 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 PRDX3P30048 256 aaKnown RBP10.52□□□□□ -0.73
SHMT2-218ENST00000555213 SLC1A6P48664 564 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 HNMTP50135 292 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 ABCE1P61221 599 aaKnown RBP10.52□□□□□ -0.73
SHMT2-218ENST00000555213 PPP1CAP62136 330 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 SHC2P98077 582 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 CDKL1Q00532 357 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 NFKB2Q00653 900 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 SF3A3Q12874 501 aaKnown RBP eCLIP10.52□□□□□ -0.731e-13■■■□□ 16.4
SHMT2-218ENST00000555213 SLC5A12Q1EHB4 618 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 C3orf38Q5JPI3 329 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 TMTC4Q5T4D3 741 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 THEMIS2Q5TEJ8 643 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 LIPMQ5VYY2 423 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 ATG16L1Q676U5 607 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 ZNF574Q6ZN55 896 aaPredicted RBP10.52□□□□□ -0.73
SHMT2-218ENST00000555213 RPS27LQ71UM5 84 aaKnown RBP10.52□□□□□ -0.73
SHMT2-218ENST00000555213 RAB11FIP2Q7L804 512 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 TMPRSS9Q7Z410 1059 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 CPLX4Q7Z7G2 160 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 FAM129CQ86XR2 697 aa10.52□□□□□ -0.73
SHMT2-218ENST00000555213 GPSM1Q86YR5 675 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms