RNA–Protein interactions for RNA: ENST00000553693.5

SCFD1-210, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-210ENST00000553693 CALCOCO2Q13137 446 aa3.3□□□□□ -1.88
SCFD1-210ENST00000553693 MTHFSDQ2M296 383 aaKnown RBP3.3□□□□□ -1.88
SCFD1-210ENST00000553693 MOGAT2Q3SYC2 334 aa3.3□□□□□ -1.88
SCFD1-210ENST00000553693 PHLDA2Q53GA4 152 aa3.3□□□□□ -1.88
SCFD1-210ENST00000553693 SPDYCQ5MJ68 293 aa3.3□□□□□ -1.88
SCFD1-210ENST00000553693 FAM180BQ6P0A1 224 aa3.3□□□□□ -1.88
SCFD1-210ENST00000553693 ZNF343Q6P1L6 599 aa3.3□□□□□ -1.88
SCFD1-210ENST00000553693 CLEC4GQ6UXB4 293 aa3.3□□□□□ -1.88
SCFD1-210ENST00000553693 KIF6Q6ZMV9 814 aa3.3□□□□□ -1.88
SCFD1-210ENST00000553693 C4orf50Q6ZRC1 276 aa3.3□□□□□ -1.88
SCFD1-210ENST00000553693 MCUQ8NE86 351 aa3.3□□□□□ -1.88
SCFD1-210ENST00000553693 EXD1Q8NHP7 514 aa3.3□□□□□ -1.88
SCFD1-210ENST00000553693 GATAD1Q8WUU5 269 aa3.3□□□□□ -1.88
SCFD1-210ENST00000553693 FAM120BQ96EK7 910 aaKnown RBP3.3□□□□□ -1.88
SCFD1-210ENST00000553693 TBC1D17Q9HA65 648 aa3.3□□□□□ -1.88
SCFD1-210ENST00000553693 WSB2Q9NYS7 404 aaPredicted RBP3.3□□□□□ -1.88
SCFD1-210ENST00000553693 STUB1Q9UNE7 303 aa3.3□□□□□ -1.88
SCFD1-210ENST00000553693 TNNQ9UQP3 1299 aa3.3□□□□□ -1.88
SCFD1-210ENST00000553693 PPP2R2CQ9Y2T4 447 aa3.3□□□□□ -1.88
SCFD1-210ENST00000553693 WBP11Q9Y2W2 641 aaKnown RBP3.3□□□□□ -1.88
SCFD1-210ENST00000553693 REREQ9P2R6 1566 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 CPS1P31327 1500 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 MLH3Q9UHC1 1453 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 PTPRKQ15262 1439 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 PCDH11YQ9BZA8 1340 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 ZBED4O75132 1171 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 CAPN2P17655 700 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 HLA-FP30511 346 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 MATR3P43243 847 aaKnown RBP eCLIP3.29□□□□□ -1.889e-7■■■□□ 15
SCFD1-210ENST00000553693 NAP1L1P55209 391 aaKnown RBP3.29□□□□□ -1.88
SCFD1-210ENST00000553693 PEX6Q13608 980 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 HERC3Q15034 1050 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 C15orf59Q2T9L4 293 aaPredicted RBP3.29□□□□□ -1.88
SCFD1-210ENST00000553693 SLC35D3Q5M8T2 416 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 SLC39A11Q8N1S5 342 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 Q8NBF4 154 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 NUP37Q8NFH4 326 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 OR1L3Q8NH93 324 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 SSMEM1Q8WWF3 244 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 CENPTQ96BT3 561 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 PRICKLE1Q96MT3 831 aaPredicted RBP3.29□□□□□ -1.88
SCFD1-210ENST00000553693 GAL3ST4Q96RP7 486 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 CDRT15Q96T59 188 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 PAFAH2Q99487 392 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 NKX3-1Q99801 234 aaPredicted RBP3.29□□□□□ -1.88
SCFD1-210ENST00000553693 SOSTQ9BQB4 213 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 WNT5BQ9H1J7 359 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 NDE1Q9NXR1 346 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 CEP170BQ9Y4F5 1589 aaPredicted RBP3.29□□□□□ -1.88
SCFD1-210ENST00000553693 ARHGAP5Q13017 1502 aa3.29□□□□□ -1.88
SCFD1-210ENST00000553693 A0A1W2PR80 420 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 IGHV3-13P01766 116 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 TNFAIP3P21580 790 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 BDNFP23560 247 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 CSTF2P33240 577 aaKnown RBP eCLIP3.28□□□□□ -1.88
SCFD1-210ENST00000553693 PAX8Q06710 450 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 TAF10Q12962 218 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 HYIQ5T013 277 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 C11orf63Q6NUN7 778 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 TEX38Q6PEX7 206 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 RPAP2Q8IXW5 612 aaPredicted RBP3.28□□□□□ -1.88
SCFD1-210ENST00000553693 LINC00612Q8N6U2 182 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 MIPOL1Q8TD10 442 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 ZNF486Q96H40 463 aaPredicted RBP3.28□□□□□ -1.88
SCFD1-210ENST00000553693 NECTIN4Q96NY8 510 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 MTMR12Q9C0I1 747 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 SHARPINQ9H0F6 387 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 THAP2Q9H0W7 228 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 TRPV4Q9HBA0 871 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 CHST11Q9NPF2 352 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 ZNF215Q9UL58 517 aaPredicted RBP3.28□□□□□ -1.88
SCFD1-210ENST00000553693 CSNK1G3Q9Y6M4 447 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 MYO3AQ8NEV4 1616 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 VWDEQ8N2E2 1590 aa3.28□□□□□ -1.88
SCFD1-210ENST00000553693 MYO5CQ9NQX4 1742 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.27□□□□□ -1.89
SCFD1-210ENST00000553693 MROH2AA6NES4 1674 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 ZNF142P52746 1687 aaPredicted RBP3.27□□□□□ -1.89
SCFD1-210ENST00000553693 ZNF318Q5VUA4 2279 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 DNMT1P26358 1616 aaKnown RBP3.27□□□□□ -1.89
SCFD1-210ENST00000553693 KIF14Q15058 1648 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 ITIH6Q6UXX5 1313 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 NEURL4Q96JN8 1562 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 A0A1W2PPR1 153 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 H0YAE9 185 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 HPRP00739 348 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 TRIM21P19474 475 aaKnown RBP3.27□□□□□ -1.89
SCFD1-210ENST00000553693 NRIP1P48552 1158 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 CLNS1AP54105 237 aaKnown RBP3.27□□□□□ -1.89
SCFD1-210ENST00000553693 MC1RQ01726 317 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 CREB5Q02930 508 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 COX10Q12887 443 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 LY6DQ14210 128 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 EFTUD2Q15029 972 aaKnown RBP eCLIP3.27□□□□□ -1.89
SCFD1-210ENST00000553693 DUSP28Q4G0W2 176 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 XKR3Q5GH77 459 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 TMEM211Q6ICI0 200 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 NOTUMQ6P988 496 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 SZRD1Q7Z422 152 aa3.27□□□□□ -1.89
SCFD1-210ENST00000553693 TBC1D1Q86TI0 1168 aaPredicted RBP3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms