RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 CTPS1P17812 591 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 KDELR2P33947 212 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 ATP5C1P36542 298 aaKnown RBP17.06■□□□□ 0.32
SYNE3-202ENST00000553340 LIPAP38571 399 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 SEPHS1P49903 392 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 VMACQ2NL98 169 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 STEAP3Q658P3 488 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 LINGO4Q6UY18 593 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 VTCN1Q7Z7D3 282 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 COPS4Q9BT78 406 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 ASB8Q9H765 288 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 RDH14Q9HBH5 336 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP17.06■□□□□ 0.32
SYNE3-202ENST00000553340 PRSS21Q9Y6M0 314 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 SEMG1P04279 462 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 BMP1P13497 986 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 TACR1P25103 407 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 MAPK1P28482 360 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 ARF5P84085 180 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 ELP6Q0PNE2 266 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 RNF219Q5W0B1 726 aaPredicted RBP17.06■□□□□ 0.32
SYNE3-202ENST00000553340 USP43Q70EL4 1123 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 SLC7A5P1Q8MH63 180 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 AMER2Q8N7J2 671 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 NELL1Q92832 810 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 THUMPD1Q9NXG2 353 aaKnown RBP17.06■□□□□ 0.32
SYNE3-202ENST00000553340 RNF6Q9Y252 685 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 TESMINQ9Y4I5 508 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 A3GALT2U3KPV4 340 aa17.06■□□□□ 0.32
SYNE3-202ENST00000553340 OR6C75A6NL08 312 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 ASNA1O43681 348 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 LRATO95237 230 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 PGLSO95336 258 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 SDC1P18827 310 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 GJA8P48165 433 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 CAMK2GQ13555 558 aaPredicted RBP17.05■□□□□ 0.32
SYNE3-202ENST00000553340 GPRC6AQ5T6X5 926 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 OR4F3Q6IEY1 312 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 FAHD1Q6P587 224 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 ERICH5Q6P6B1 374 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 MBOAT1Q6ZNC8 495 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 MSANTD1Q6ZTZ1 278 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 ENTHD1Q8IYW4 607 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 APH1BQ8WW43 257 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 PROX1Q92786 737 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 DNASE1L2Q92874 299 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 HSH2DQ96JZ2 352 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 CRISPLD1Q9H336 500 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 ELOVL6Q9H5J4 265 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 A0A1B0GVM2 712 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 MTMR11A4FU01 709 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 CLIC1O00299 241 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 PTTG1O95997 202 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 ANXA5P08758 320 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 ALPIP09923 528 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 CTSKP43235 329 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 KIR3DL1P43629 444 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 SGSHP51688 502 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 CARTPTQ16568 116 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 CCDC80Q76M96 950 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 EIF3MQ7L2H7 374 aaKnown RBP17.05■□□□□ 0.32
SYNE3-202ENST00000553340 GALNT10Q86SR1 603 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 ZZZ3Q8IYH5 903 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 FAM193BQ96PV7 902 aaPredicted RBP17.05■□□□□ 0.32
SYNE3-202ENST00000553340 CDK5RAP1Q96SZ6 601 aaKnown RBP17.05■□□□□ 0.32
SYNE3-202ENST00000553340 EHD1Q9H4M9 534 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 KLHL3Q9UH77 587 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 SNX6Q9UNH7 406 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 IFT52Q9Y366 437 aa17.05■□□□□ 0.32
SYNE3-202ENST00000553340 FZD6O60353 706 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 KCNK5O95279 499 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 C9P02748 559 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 PCSK2P16519 638 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 ENGP17813 658 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 ITGALP20701 1170 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 S100A5P33763 92 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 TRPC1P48995 793 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 ITGA1P56199 1179 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 ZNF45Q02386 682 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 NFATC2Q13469 925 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 CBLL1Q75N03 491 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 RASAL3Q86YV0 1011 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 HRASLS5Q96KN8 279 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 PANX1Q96RD7 426 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 SLC32A1Q9H598 525 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 KCNK2O95069 426 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 CD160O95971 181 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 DBTP11182 482 aaKnown RBP17.04■□□□□ 0.32
SYNE3-202ENST00000553340 ZNF24P17028 368 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 CA5AP35218 305 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 TBCEQ15813 527 aaPredicted RBP17.04■□□□□ 0.32
SYNE3-202ENST00000553340 NDUFA5Q16718 116 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 TIGD6Q17RP2 521 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 DUOXA1Q1HG43 343 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 CLLU1OSQ5K130 101 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 TPRG1LQ5T0D9 272 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 PNCKQ6P2M8 343 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 CHST9Q7L1S5 443 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 MYDGFQ969H8 173 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 SIRT5Q9NXA8 310 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms