RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 KCNE1BA0A087WTH5 132 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 C19orf67A6NJJ6 358 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 ADAM23O75077 832 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 FADS2O95864 444 aaKnown RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 MT-ND2P03891 347 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 NUDT7P0C024 238 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 IMPDH2P12268 514 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 ITIH1P19827 911 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 HOXA9P31269 272 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 CASP9P55211 416 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 AP1S1P61966 158 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 NCS1P62166 190 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 ELAVL2Q12926 359 aaKnown RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 CBX3Q13185 183 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 NPTX1Q15818 432 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 RGS21Q2M5E4 152 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 KIAA1841Q6NSI8 718 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 SHQ1Q6PI26 577 aaKnown RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 DNAJB7Q7Z6W7 309 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 ANKRD13BQ86YJ7 626 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 CCDC71Q8IV32 467 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 RBM12BQ8IXT5 1001 aaKnown RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 CRIPAKQ8N1N5 446 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 BEND7Q8N7W2 519 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 DCAF4L2Q8NA75 395 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 HJURPQ8NCD3 748 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 OR52E4Q8NGH9 312 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 ZNF461Q8TAF7 563 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 MYLIPQ8WY64 445 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 RPL3LQ92901 407 aaKnown RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 PPP1R14BQ96C90 147 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 REXO5Q96IC2 774 aaKnown RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 MAGED4Q96JG8 741 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 P2RY13Q9BPV8 354 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 TRIT1Q9H3H1 467 aaKnown RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 RETREG1Q9H6L5 497 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 MAGIXQ9H6Y5 334 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 ELAC1Q9H777 363 aaKnown RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 RDH14Q9HBH5 336 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 AASDHPPTQ9NRN7 309 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 INIPQ9NRY2 104 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 ASIC5Q9NY37 505 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 TMPRSS11EQ9UL52 423 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 MAN2B2Q9Y2E5 1009 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 BTBD3Q9Y2F9 522 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 CPQQ9Y646 472 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 TMEM247A6NEH6 219 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 WNT9AO14904 365 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 RECQL5O94762 991 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 CPSF4O95639 269 aaKnown RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 ENGP17813 658 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 AOAHP28039 575 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 MAGEA2P43356 314 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 SLC35A2P78381 396 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 CYP4F8P98187 520 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 GSTM4Q03013 218 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 PTSQ03393 145 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 ABHD18Q0P651 414 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 LMAN2Q12907 356 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 DDX39BQ13838 428 aaKnown RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 UGT8Q16880 541 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 ZNF648Q5T619 568 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 OR2T5Q6IEZ7 315 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 PDE12Q6L8Q7 609 aaKnown RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 ZNF621Q6ZSS3 439 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 HIPK1Q86Z02 1210 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 OR2T29Q8NH02 315 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 FBLIM1Q8WUP2 373 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 OVCA2Q8WZ82 227 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 ALPK1Q96QP1 1244 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 PANX1Q96RD7 426 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 PDP1Q9P0J1 537 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 PNMA8BQ9ULN7 279 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-213ENST00000552720 ZNF451Q9Y4E5 1061 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 ORC6Q9Y5N6 252 aa7.28□□□□□ -1.24
LIMA1-213ENST00000552720 SOBPA7XYQ1 873 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 ZBBXA8MT70 800 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 CLDN25C9JDP6 229 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 CLIC1O00299 241 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 FPGTO14772 594 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 SERPINB7O75635 380 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 KCNK5O95279 499 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 COL6A1P12109 1028 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 PORP16435 677 aaPredicted RBP7.27□□□□□ -1.24
LIMA1-213ENST00000552720 GJA1P17302 382 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 AMD1P17707 334 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 CD22P20273 847 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 FUT4P22083 530 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 PSMB9P28065 219 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 TPP2P29144 1249 aaPredicted RBP7.27□□□□□ -1.24
LIMA1-213ENST00000552720 AQP1P29972 269 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 RYKP34925 604 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 HPCAL1P37235 193 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 HALP42357 657 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 NSG1P42857 185 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 ALDH7A1P49419 539 aaKnown RBP7.27□□□□□ -1.24
LIMA1-213ENST00000552720 CRYBA2P53672 197 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 WNT3P56703 355 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 SMU1Q2TAY7 513 aa7.27□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms