RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 PDYNP01213 254 aa29.39■■■□□ 2.3
CCM2-219ENST00000544363 C1GALT1C1LP0DN25 315 aa29.39■■■□□ 2.3
CCM2-219ENST00000544363 XRCC1P18887 633 aaPredicted RBP29.39■■■□□ 2.3
CCM2-219ENST00000544363 VARSP26640 1264 aaKnown RBP29.39■■■□□ 2.3
CCM2-219ENST00000544363 ADSLP30566 484 aaPredicted RBP29.39■■■□□ 2.3
CCM2-219ENST00000544363 KLF10Q13118 480 aa29.39■■■□□ 2.3
CCM2-219ENST00000544363 PMS2CLQ68D20 193 aa29.39■■■□□ 2.3
CCM2-219ENST00000544363 NXPE4Q6UWF7 544 aa29.39■■■□□ 2.3
CCM2-219ENST00000544363 SFRP1Q8N474 314 aa29.39■■■□□ 2.3
CCM2-219ENST00000544363 MTFMTQ96DP5 389 aaKnown RBP29.39■■■□□ 2.3
CCM2-219ENST00000544363 TAC3Q9UHF0 121 aa29.39■■■□□ 2.3
CCM2-219ENST00000544363 H0YIV9 168 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 RGS14O43566 566 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 ALDOCP09972 364 aaKnown RBP29.38■■■□□ 2.29
CCM2-219ENST00000544363 SLC2A4P14672 509 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 SCTRP47872 440 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 C21orf59P57076 290 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 SRSF5Q13243 272 aaKnown RBP29.38■■■□□ 2.29
CCM2-219ENST00000544363 ELOCQ15369 112 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 ATP6AP1LQ52LC2 224 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 LYSMD4Q5XG99 296 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 EFCAB11Q9BUY7 163 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 ACAT2Q9BWD1 397 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 ARHGEF17Q96PE2 2063 aaPredicted RBP29.38■■■□□ 2.29
CCM2-219ENST00000544363 KIR2DS5A0A0G2JLQ3 304 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 A0A0G2JNG1 304 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 SERTM1A2A2V5 107 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 KIR2DS3K7RE56 304 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 DHPSP49366 369 aaPredicted RBP29.38■■■□□ 2.29
CCM2-219ENST00000544363 ZNF33BQ06732 778 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 KIR2DS5Q14953 304 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 C6orf136Q5SQH8 315 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 SPATA19Q7Z5L4 167 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 C17orf64Q86WR6 236 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 TRIM48Q8IWZ4 208 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 ZFPM2Q8WW38 1151 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 FBXO4Q9UKT5 387 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 PCDHGA11Q9Y5H2 935 aa29.38■■■□□ 2.29
CCM2-219ENST00000544363 PCM1Q15154 2024 aa29.37■■■□□ 2.29
CCM2-219ENST00000544363 LSM1O15116 133 aaKnown RBP29.37■■■□□ 2.29
CCM2-219ENST00000544363 SHMT2P34897 504 aa29.37■■■□□ 2.29
CCM2-219ENST00000544363 ATP4BP51164 291 aa29.37■■■□□ 2.29
CCM2-219ENST00000544363 NEK2P51955 445 aa29.37■■■□□ 2.29
CCM2-219ENST00000544363 SQLEQ14534 574 aa29.37■■■□□ 2.29
CCM2-219ENST00000544363 NR6A1Q15406 480 aa29.37■■■□□ 2.29
CCM2-219ENST00000544363 WDR20Q8TBZ3 569 aa29.37■■■□□ 2.29
CCM2-219ENST00000544363 LCN9Q8WX39 176 aa29.37■■■□□ 2.29
CCM2-219ENST00000544363 PATE1Q8WXA2 126 aa29.37■■■□□ 2.29
CCM2-219ENST00000544363 ACTR5Q9H9F9 607 aaPredicted RBP29.37■■■□□ 2.29
CCM2-219ENST00000544363 SLC40A1Q9NP59 571 aa29.37■■■□□ 2.29
CCM2-219ENST00000544363 TAGLN3Q9UI15 199 aa29.37■■■□□ 2.29
CCM2-219ENST00000544363 TDRD6O60522 2096 aaKnown RBP29.36■■■□□ 2.29
CCM2-219ENST00000544363 VIPP01282 170 aa29.36■■■□□ 2.29
CCM2-219ENST00000544363 ESRRAP11474 423 aaPredicted RBP29.36■■■□□ 2.29
CCM2-219ENST00000544363 CDH1P12830 882 aa29.36■■■□□ 2.29
CCM2-219ENST00000544363 CALB2P22676 271 aa29.36■■■□□ 2.29
CCM2-219ENST00000544363 NCALDP61601 193 aa29.36■■■□□ 2.29
CCM2-219ENST00000544363 LAPTM5Q13571 262 aa29.36■■■□□ 2.29
CCM2-219ENST00000544363 NAA25Q14CX7 972 aa29.36■■■□□ 2.29
CCM2-219ENST00000544363 IMPG1Q17R60 797 aa29.36■■■□□ 2.29
CCM2-219ENST00000544363 PAGE2BQ5JRK9 111 aa29.36■■■□□ 2.29
CCM2-219ENST00000544363 AMIGO1Q86WK6 493 aa29.36■■■□□ 2.29
CCM2-219ENST00000544363 NAGSQ8N159 534 aa29.36■■■□□ 2.29
CCM2-219ENST00000544363 FAM46DQ8NEK8 389 aa29.36■■■□□ 2.29
CCM2-219ENST00000544363 PPP3R2Q96LZ3 170 aa29.36■■■□□ 2.29
CCM2-219ENST00000544363 POT1Q9NUX5 634 aa29.36■■■□□ 2.29
CCM2-219ENST00000544363 CPNE7Q9UBL6 633 aa29.36■■■□□ 2.29
CCM2-219ENST00000544363 SPASTQ9UBP0 616 aa29.36■■■□□ 2.29
CCM2-219ENST00000544363 SPAG17Q6Q759 2223 aa29.36■■■□□ 2.29
CCM2-219ENST00000544363 PIK3R1P27986 724 aa29.35■■■□□ 2.29
CCM2-219ENST00000544363 PSMB5P28074 263 aa29.35■■■□□ 2.29
CCM2-219ENST00000544363 HNRNPKP61978 463 aaKnown RBP eCLIP29.35■■■□□ 2.29
CCM2-219ENST00000544363 ERVK-8P63133 956 aa29.35■■■□□ 2.29
CCM2-219ENST00000544363 UBE2IP63279 158 aaKnown RBP29.35■■■□□ 2.29
CCM2-219ENST00000544363 SLBPQ14493 270 aaKnown RBP eCLIP29.35■■■□□ 2.29
CCM2-219ENST00000544363 TEAD4Q15561 434 aa29.35■■■□□ 2.29
CCM2-219ENST00000544363 MED27Q6P2C8 311 aa29.35■■■□□ 2.29
CCM2-219ENST00000544363 GKN2Q86XP6 184 aa29.35■■■□□ 2.29
CCM2-219ENST00000544363 ACPTQ9BZG2 426 aa29.35■■■□□ 2.29
CCM2-219ENST00000544363 GEMIN8Q9NWZ8 242 aaKnown RBP29.35■■■□□ 2.29
CCM2-219ENST00000544363 OR6C2Q9NZP2 312 aa29.35■■■□□ 2.29
CCM2-219ENST00000544363 PCDHB11Q9Y5F2 797 aa29.35■■■□□ 2.29
CCM2-219ENST00000544363 NCOR1O75376 2440 aa29.35■■■□□ 2.29
CCM2-219ENST00000544363 ANKRD65E5RJM6 399 aa29.34■■■□□ 2.29
CCM2-219ENST00000544363 PRICKLE3O43900 615 aaPredicted RBP29.34■■■□□ 2.29
CCM2-219ENST00000544363 PRDX6P30041 224 aa29.34■■■□□ 2.29
CCM2-219ENST00000544363 IRX1P78414 480 aaPredicted RBP29.34■■■□□ 2.29
CCM2-219ENST00000544363 HMGCS1Q01581 520 aa29.34■■■□□ 2.29
CCM2-219ENST00000544363 AP5B1Q2VPB7 878 aa29.34■■■□□ 2.29
CCM2-219ENST00000544363 OR4E2Q8NGC2 313 aa29.34■■■□□ 2.29
CCM2-219ENST00000544363 LMX1AQ8TE12 382 aa29.34■■■□□ 2.29
CCM2-219ENST00000544363 SLC37A2Q8TED4 501 aa29.34■■■□□ 2.29
CCM2-219ENST00000544363 ZDHHC1Q8WTX9 485 aa29.34■■■□□ 2.29
CCM2-219ENST00000544363 JPH3Q8WXH2 748 aaPredicted RBP29.34■■■□□ 2.29
CCM2-219ENST00000544363 REPS1Q96D71 796 aa29.34■■■□□ 2.29
CCM2-219ENST00000544363 PELI2Q9HAT8 420 aa29.34■■■□□ 2.29
CCM2-219ENST00000544363 HNRNPCL1O60812 293 aaKnown RBP29.34■■■□□ 2.29
CCM2-219ENST00000544363 GSTA3Q16772 222 aa29.34■■■□□ 2.29
CCM2-219ENST00000544363 HIST2H2ACQ16777 129 aaPredicted RBP29.34■■■□□ 2.29
CCM2-219ENST00000544363 PLK5Q496M5 336 aa29.34■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms