RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 EEF1A2Q05639 463 aaKnown RBP16.96■□□□□ 0.31
CLSTN3-214ENST00000542663 CCSMST1Q4G0I0 132 aa16.96■□□□□ 0.31
CLSTN3-214ENST00000542663 RPTNQ6XPR3 784 aa16.96■□□□□ 0.31
CLSTN3-214ENST00000542663 ZNF534Q76KX8 674 aa16.96■□□□□ 0.31
CLSTN3-214ENST00000542663 RNF44Q7L0R7 432 aa16.96■□□□□ 0.31
CLSTN3-214ENST00000542663 FAM71DQ8N9W8 422 aa16.96■□□□□ 0.31
CLSTN3-214ENST00000542663 ASZ1Q8WWH4 475 aa16.96■□□□□ 0.31
CLSTN3-214ENST00000542663 HDAC10Q969S8 669 aa16.96■□□□□ 0.31
CLSTN3-214ENST00000542663 ALS2CR12Q96Q35 445 aa16.96■□□□□ 0.31
CLSTN3-214ENST00000542663 CARD6Q9BX69 1037 aa16.96■□□□□ 0.31
CLSTN3-214ENST00000542663 SYNPO2LQ9H987 977 aa16.96■□□□□ 0.31
CLSTN3-214ENST00000542663 SEC14L3Q9UDX4 400 aa16.96■□□□□ 0.31
CLSTN3-214ENST00000542663 ITGB1BP2Q9UKP3 347 aa16.96■□□□□ 0.31
CLSTN3-214ENST00000542663 A0A1W2PPV9 198 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 IDSB3KWA1 339 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 C19orf84I3L1E1 186 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 FFAR3O14843 346 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 GPR42O15529 346 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 CBFA2T2O43439 604 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 SLCO2B1O94956 709 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 RASAL1O95294 804 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 GOT2P00505 430 aaKnown RBP16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 TPM1P09493 284 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 ITGAMP11215 1152 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 FBLP22087 321 aaKnown RBP16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 AOAHP28039 575 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 CDSNQ15517 529 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 MTFR2Q6P444 385 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 CNSTQ6PJW8 725 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 KRT222Q8N1A0 295 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 OR2L3Q8NG85 312 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 OR2A1Q8NGT9 310 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 DNAJB8Q8NHS0 232 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 MIPEPQ99797 713 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 RAB11FIP5Q9BXF6 653 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 RNF32Q9H0A6 362 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 SLC39A10Q9ULF5 831 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 FAM169AQ9Y6X4 670 aa16.95■□□□□ 0.3
CLSTN3-214ENST00000542663 SCN3AQ9NY46 2000 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 CRYABP02511 175 aaKnown RBP16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 EIF2S1P05198 315 aaKnown RBP16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 EFNA3P52797 238 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 EMP2P54851 167 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 KRTAP10-9P60411 292 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 PMP22Q01453 160 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 TESK1Q15569 626 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 MUM1Q2TAK8 710 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 PRTGQ2VWP7 1150 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 FAAH2Q6GMR7 532 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 HIBCHQ6NVY1 386 aaPredicted RBP16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 XKRXQ6PP77 449 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 RIPOR1Q6ZS17 1223 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 TAB3Q8N5C8 712 aaPredicted RBP16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 AMER3Q8N944 861 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 OR52K1Q8NGK4 314 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 HMGCLL1Q8TB92 370 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 ALG3Q92685 438 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 ZNF778Q96MU6 729 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 PCDHA13Q9Y5I0 950 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 NFS1Q9Y697 457 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 HCFC1P51610 2035 aa16.94■□□□□ 0.3
CLSTN3-214ENST00000542663 OR2A25A4D2G3 310 aa16.93■□□□□ 0.3
CLSTN3-214ENST00000542663 WFS1O76024 890 aa16.93■□□□□ 0.3
CLSTN3-214ENST00000542663 TJP3O95049 919 aa16.93■□□□□ 0.3
CLSTN3-214ENST00000542663 APOA4P06727 396 aa16.93■□□□□ 0.3
CLSTN3-214ENST00000542663 BDKRB1P46663 353 aa16.93■□□□□ 0.3
CLSTN3-214ENST00000542663 ACVR1Q04771 509 aa16.93■□□□□ 0.3
CLSTN3-214ENST00000542663 TBX2Q13207 712 aaPredicted RBP16.93■□□□□ 0.3
CLSTN3-214ENST00000542663 PCOLCEQ15113 449 aa16.93■□□□□ 0.3
CLSTN3-214ENST00000542663 TSTD2Q5T7W7 516 aa16.93■□□□□ 0.3
CLSTN3-214ENST00000542663 FBXO42Q6P3S6 717 aa16.93■□□□□ 0.3
CLSTN3-214ENST00000542663 AFTPHQ6ULP2 937 aa16.93■□□□□ 0.3
CLSTN3-214ENST00000542663 CNGA4Q8IV77 575 aa16.93■□□□□ 0.3
CLSTN3-214ENST00000542663 OR4L1Q8NH43 312 aa16.93■□□□□ 0.3
CLSTN3-214ENST00000542663 RAD51AP1Q96B01 352 aa16.93■□□□□ 0.3
CLSTN3-214ENST00000542663 RIC8BQ9NVN3 520 aa16.93■□□□□ 0.3
CLSTN3-214ENST00000542663 RUVBL2Q9Y230 463 aaKnown RBP16.93■□□□□ 0.3
CLSTN3-214ENST00000542663 LOC102723996A0A087X1L8 192 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 OR5H15A6NDH6 313 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 RCCD1A6NED2 376 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 F8W8V4 182 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 SLC19A2O60779 497 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 PRAMEF2O60811 474 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 C1orf105O95561 183 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 CXCR2P25025 360 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 RWDD2BP57060 319 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 DSG2Q14126 1118 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 C3AR1Q16581 482 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 P3H1Q32P28 736 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 LDB1Q86U70 411 aaPredicted RBP16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 ADAMTS18Q8TE60 1221 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 CABS1Q96KC9 395 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 TTC1Q99614 292 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 ZFYVE21Q9BQ24 234 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 TSSK1BQ9BXA7 367 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 ZNF700Q9H0M5 742 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 TRPC4Q9UBN4 977 aa16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 TINAGQ9UJW2 476 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms