RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ESAMQ96AP7 390 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 GRAMD1AQ96CP6 724 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 CCDC74BQ96LY2 380 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 PPM1MQ96MI6 270 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 FAM111AQ96PZ2 611 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 KCNK9Q9NPC2 374 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 MID2Q9UJV3 735 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 A8MT66 165 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 G3V2L1 256 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 PRPF4O43172 522 aaKnown RBP eCLIP16.5■□□□□ 0.231e-6■■■■□ 23.6
LIG1-204ENST00000542460 DLX3O60479 287 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 WDR47O94967 919 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 MYL2P10916 166 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 JUPP14923 745 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 LSSP48449 732 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 AGTR2P50052 363 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 CLDN6P56747 220 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 NFKB2Q00653 900 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 NAA25Q14CX7 972 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 PCBP2Q15366 365 aaKnown RBP eCLIP16.5■□□□□ 0.231e-6■■■■■ 28
LIG1-204ENST00000542460 KIAA1614Q5VZ46 1190 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 RAB44Q7Z6P3 723 aaPredicted RBP16.5■□□□□ 0.23
LIG1-204ENST00000542460 B3GNT8Q7Z7M8 397 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 TRIM73Q86UV7 250 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 KMT5CQ86Y97 462 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 GALNT15Q8N3T1 639 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 ARMC2Q8NEN0 867 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 KLHL6Q8WZ60 621 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 CCDC126Q96EE4 140 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 TRAPPC9Q96Q05 1148 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 OR4K3Q96R72 315 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 STRADBQ9C0K7 418 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 MRPS30Q9NP92 439 aaKnown RBP16.5■□□□□ 0.23
LIG1-204ENST00000542460 SLC17A7Q9P2U7 560 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 KCNE2Q9Y6J6 123 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 IGHV5-51A0A0C4DH38 117 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 SLC9B1P1A6NJY1 282 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 K7EPI3 171 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 TM9SF1O15321 606 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 MAP3K7O43318 606 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 CCNT2O60583 730 aaKnown RBP16.49■□□□□ 0.23
LIG1-204ENST00000542460 CSO75390 466 aaKnown RBP16.49■□□□□ 0.23
LIG1-204ENST00000542460 ZBTB11O95625 1053 aaPredicted RBP16.49■□□□□ 0.23
LIG1-204ENST00000542460 CPA3P15088 417 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 HRH2P25021 359 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 TTMPQ5BVD1 217 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 ZYG11AQ6WRX3 759 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 LRRC70Q7Z2Q7 622 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 C17orf64Q86WR6 236 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 FAM20CQ8IXL6 584 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 RCBTB1Q8NDN9 531 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 ZUFSPQ96AP4 578 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 CAPS2Q9BXY5 557 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 ZNF768Q9H5H4 540 aaKnown RBP16.49■□□□□ 0.23
LIG1-204ENST00000542460 DNAJC11Q9NVH1 559 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 COPG2Q9UBF2 871 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 OPTCQ9UBM4 332 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 DYRK1BQ9Y463 629 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 KLK4Q9Y5K2 254 aa16.49■□□□□ 0.23
LIG1-204ENST00000542460 CNOT1A5YKK6 2376 aaKnown RBP16.48■□□□□ 0.23
LIG1-204ENST00000542460 HMGB1P1B2RPK0 211 aaPredicted RBP16.48■□□□□ 0.23
LIG1-204ENST00000542460 HGSO14964 777 aaPredicted RBP16.48■□□□□ 0.23
LIG1-204ENST00000542460 ZWINTO95229 277 aa16.48■□□□□ 0.23
LIG1-204ENST00000542460 PVRP15151 417 aa16.48■□□□□ 0.23
LIG1-204ENST00000542460 ST6GAL1P15907 406 aa16.48■□□□□ 0.23
LIG1-204ENST00000542460 MAGP20916 626 aa16.48■□□□□ 0.23
LIG1-204ENST00000542460 EEF1DP29692 281 aaKnown RBP16.48■□□□□ 0.23
LIG1-204ENST00000542460 GRIA3P42263 894 aa16.48■□□□□ 0.23
LIG1-204ENST00000542460 ARL4DP49703 201 aa16.48■□□□□ 0.23
LIG1-204ENST00000542460 SEPHS1P49903 392 aa16.48■□□□□ 0.23
LIG1-204ENST00000542460 PRKAA2P54646 552 aa16.48■□□□□ 0.23
LIG1-204ENST00000542460 YBX1P67809 324 aaKnown RBP16.48■□□□□ 0.23
LIG1-204ENST00000542460 HSD11B2P80365 405 aa16.48■□□□□ 0.23
LIG1-204ENST00000542460 TMPRSS7Q7RTY8 843 aa16.48■□□□□ 0.23
LIG1-204ENST00000542460 SLC41A2Q96JW4 573 aa16.48■□□□□ 0.23
LIG1-204ENST00000542460 GPRC5BQ9NZH0 403 aa16.48■□□□□ 0.23
LIG1-204ENST00000542460 ASB1Q9Y576 335 aa16.48■□□□□ 0.23
LIG1-204ENST00000542460 UNC13CQ8NB66 2214 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 SIX3O95343 332 aaPredicted RBP16.47■□□□□ 0.23
LIG1-204ENST00000542460 ADRB1P08588 477 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 EPB42P16452 691 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 NELFEP18615 380 aaKnown RBP16.47■□□□□ 0.23
LIG1-204ENST00000542460 GNAZP19086 355 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 IMPDH1P20839 514 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 CSTF2P33240 577 aaKnown RBP eCLIP16.47■□□□□ 0.23
LIG1-204ENST00000542460 ETV4P43268 484 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 SLC18A1P54219 525 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 CDC16Q13042 620 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 PDK4Q16654 411 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 FIGLAQ6QHK4 219 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 CHCHD4Q8N4Q1 142 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 C19orf47Q8N9M1 422 aaKnown RBP16.47■□□□□ 0.23
LIG1-204ENST00000542460 SNX31Q8N9S9 440 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 AGBL5Q8NDL9 886 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 SLC5A11Q8WWX8 675 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 NEIL2Q969S2 332 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 TCTN2Q96GX1 697 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 LIN37Q96GY3 246 aaPredicted RBP16.47■□□□□ 0.23
LIG1-204ENST00000542460 DPH7Q9BTV6 452 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 C1QTNF3Q9BXJ4 246 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms