RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 CPXM2Q8N436 756 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 ZNF366Q8N895 744 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 ARL10Q8N8L6 244 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 ING5Q8WYH8 240 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 ERLEC1Q96DZ1 483 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 FAM126AQ9BYI3 521 aaPredicted RBP12.18□□□□□ -0.46
RNF4-222ENST00000541204 SUV39H2Q9H5I1 410 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 CLMPQ9H6B4 373 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 OPTCQ9UBM4 332 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 DAPK2Q9UIK4 370 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 ZNF99A8MXY4 864 aaPredicted RBP12.18□□□□□ -0.46
RNF4-222ENST00000541204 BCKDKO14874 412 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 SOCS5O75159 536 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 B3GALT4O96024 378 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 FTH1P02794 183 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 DGKAP23743 735 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 ALDH4A1P30038 563 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 RXRGP48443 463 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 OCA2Q04671 838 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 CD300CQ08708 224 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 CDK5R2Q13319 367 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 TOP3AQ13472 1001 aaPredicted RBP12.18□□□□□ -0.46
RNF4-222ENST00000541204 PERM1Q5SV97 790 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 SLCO6A1Q86UG4 719 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 ANKRD46Q86W74 232 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 ZCCHC7Q8N3Z6 543 aaKnown RBP12.18□□□□□ -0.46
RNF4-222ENST00000541204 VOPP1Q96AW1 172 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 SH3GL1Q99961 368 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 LRTM1Q9HBL6 345 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 TMEM165Q9HC07 324 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 VNN3Q9NY84 501 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 WNT6Q9Y6F9 365 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 PLXNA4Q9HCM2 1894 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 TMEM221A6NGB7 291 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 LOC730098B7Z3J9 87 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 MYCLP1P12525 358 aaPredicted RBP12.17□□□□□ -0.46
RNF4-222ENST00000541204 CYP4B1P13584 511 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 NRIP1P48552 1158 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 PHC1P78364 1004 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 IL1RL1Q01638 556 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 MAD2L1Q13257 205 aaPredicted RBP12.17□□□□□ -0.46
RNF4-222ENST00000541204 ZNF846Q147U1 533 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 MPP7Q5T2T1 576 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 USP45Q70EL2 814 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 FAR1Q8WVX9 515 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 SCAMP4Q969E2 229 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 TAMM41Q96BW9 452 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 ALPK1Q96QP1 1244 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 BARD1Q99728 777 aaKnown RBP12.17□□□□□ -0.46
RNF4-222ENST00000541204 CD244Q9BZW8 370 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 NAALAD2Q9Y3Q0 740 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 OARD1Q9Y530 152 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 XIRP2A4UGR9 3374 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 CHD9Q3L8U1 2897 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 SLC28A1O00337 649 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 ANGPTL1O95841 491 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 RETP07949 1114 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 LINC00271P0C7V0 271 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 TYRP14679 529 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 FMO3P31513 532 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 MAPK8P45983 427 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 MAP2K4P45985 399 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 BOP1Q14137 746 aaKnown RBP12.17□□□□□ -0.46
RNF4-222ENST00000541204 SIM2Q14190 667 aaPredicted RBP12.17□□□□□ -0.46
RNF4-222ENST00000541204 ZNF648Q5T619 568 aaPredicted RBP12.17□□□□□ -0.46
RNF4-222ENST00000541204 GPRC6AQ5T6X5 926 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 C1orf53Q5VUE5 145 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 CES5AQ6NT32 575 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 CHPFQ8IZ52 775 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 GLB1L3Q8NCI6 653 aaPredicted RBP12.17□□□□□ -0.46
RNF4-222ENST00000541204 NDNFQ8TB73 568 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 MCOLN3Q8TDD5 553 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 ZFP90Q8TF47 636 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 FAM120BQ96EK7 910 aaKnown RBP12.17□□□□□ -0.46
RNF4-222ENST00000541204 SCRN2Q96FV2 425 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 INPP5KQ9BT40 448 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 BRD9Q9H8M2 597 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 ERVK-18Q9QC07 812 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 B4GALT6Q9UBX8 382 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 SLC25A13Q9UJS0 675 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 ORC6Q9Y5N6 252 aa12.17□□□□□ -0.46
RNF4-222ENST00000541204 TRBV5-3A0A0A0MS03 114 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 KRBA1A5PL33 1030 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 TMEM247A6NEH6 219 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 BCKDHAP12694 445 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 RYKP34925 604 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 HPCAL1P37235 193 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 B4GALNT1Q00973 533 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 USP39Q53GS9 565 aaKnown RBP12.16□□□□□ -0.46
RNF4-222ENST00000541204 LY6G5CQ5SRR4 150 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 TPRG1Q6ZUI0 275 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 OR7A2PQ8NGA2 310 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 OR52E4Q8NGH9 312 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 PYCR2Q96C36 320 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 ZSWIM3Q96MP5 696 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 COPS8Q99627 209 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 HMG20AQ9NP66 347 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 KPNA4O00629 521 aaPredicted RBP12.16□□□□□ -0.46
RNF4-222ENST00000541204 PER2O15055 1255 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 SLC16A6O15403 523 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms