RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 NELL1Q92832 810 aa12.77□□□□□ -0.36
LDLR-203ENST00000535915 CNDP2Q96KP4 475 aaKnown RBP12.77□□□□□ -0.36
LDLR-203ENST00000535915 CEP44Q9C0F1 390 aa12.77□□□□□ -0.36
LDLR-203ENST00000535915 PAK6Q9NQU5 681 aaPredicted RBP12.77□□□□□ -0.36
LDLR-203ENST00000535915 TMEM9Q9P0T7 183 aa12.77□□□□□ -0.36
LDLR-203ENST00000535915 ORC6Q9Y5N6 252 aa12.77□□□□□ -0.36
LDLR-203ENST00000535915 PLXNA2O75051 1894 aa12.77□□□□□ -0.36
LDLR-203ENST00000535915 CFAP99D6REC4 459 aa12.77□□□□□ -0.37
LDLR-203ENST00000535915 LILRB3O75022 631 aa12.77□□□□□ -0.37
LDLR-203ENST00000535915 JUNBP17275 347 aaPredicted RBP12.77□□□□□ -0.37
LDLR-203ENST00000535915 PFKLP17858 780 aa12.77□□□□□ -0.37
LDLR-203ENST00000535915 IL1RNP18510 177 aa12.77□□□□□ -0.37
LDLR-203ENST00000535915 PRMT2P55345 433 aa12.77□□□□□ -0.37
LDLR-203ENST00000535915 PFN3P60673 137 aa12.77□□□□□ -0.37
LDLR-203ENST00000535915 IRF8Q02556 426 aa12.77□□□□□ -0.37
LDLR-203ENST00000535915 GRSF1Q12849 480 aaKnown RBP eCLIP12.77□□□□□ -0.37
LDLR-203ENST00000535915 C16orf72Q14CZ0 275 aa12.77□□□□□ -0.37
LDLR-203ENST00000535915 CTU2Q2VPK5 515 aaKnown RBP12.77□□□□□ -0.37
LDLR-203ENST00000535915 RBM23Q86U06 439 aaKnown RBP12.77□□□□□ -0.37
LDLR-203ENST00000535915 HIPK1Q86Z02 1210 aa12.77□□□□□ -0.37
LDLR-203ENST00000535915 ARL10Q8N8L6 244 aa12.77□□□□□ -0.37
LDLR-203ENST00000535915 BPIFB6Q8NFQ5 453 aa12.77□□□□□ -0.37
LDLR-203ENST00000535915 CDC26Q8NHZ8 85 aa12.77□□□□□ -0.37
LDLR-203ENST00000535915 MYLIPQ8WY64 445 aa12.77□□□□□ -0.37
LDLR-203ENST00000535915 PANX1Q96RD7 426 aa12.77□□□□□ -0.37
LDLR-203ENST00000535915 REXO4Q9GZR2 422 aaKnown RBP12.77□□□□□ -0.37
LDLR-203ENST00000535915 LHPPQ9H008 270 aa12.77□□□□□ -0.37
LDLR-203ENST00000535915 FAM83DQ9H4H8 585 aa12.77□□□□□ -0.37
LDLR-203ENST00000535915 THG1LQ9NWX6 298 aaKnown RBP12.77□□□□□ -0.37
LDLR-203ENST00000535915 CXorf51AA0A1B0GTR3 108 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 OR2AG2A6NM03 316 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 UPK3BL1B0FP48 263 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 UPK3BL2E5RIL1 263 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 FPGTO14772 594 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 SEC14L2O76054 403 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 CCNDBP1O95273 360 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 PABPC1P11940 636 aaKnown RBP12.76□□□□□ -0.37
LDLR-203ENST00000535915 JUPP14923 745 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 CD247P20963 164 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 PRPS1L1P21108 318 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 RECQLP46063 649 aaPredicted RBP12.76□□□□□ -0.37
LDLR-203ENST00000535915 CD47Q08722 323 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 DDX39BQ13838 428 aaKnown RBP12.76□□□□□ -0.37
LDLR-203ENST00000535915 ZCCHC8Q6NZY4 707 aaKnown RBP12.76□□□□□ -0.37
LDLR-203ENST00000535915 ZNF551Q7Z340 670 aaPredicted RBP12.76□□□□□ -0.37
LDLR-203ENST00000535915 CROCCP3Q8IVE0 287 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 SPARTQ8N0X7 666 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 OR7A2PQ8NGA2 310 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 ASZ1Q8WWH4 475 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 SNX19Q92543 992 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 POP5Q969H6 163 aaKnown RBP12.76□□□□□ -0.37
LDLR-203ENST00000535915 HSPBAP1Q96EW2 488 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 CCDC138Q96M89 665 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 RNF208Q9H0X6 261 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 PRM3Q9NNZ6 103 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 ASAH2Q9NR71 780 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 SAMD4AQ9UPU9 718 aaKnown RBP12.76□□□□□ -0.37
LDLR-203ENST00000535915 A0A1W2PQ67 120 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 CLIC1O00299 241 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 CCL16O15467 120 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 C1QCP02747 245 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 HOXB6P17509 224 aaKnown RBP12.76□□□□□ -0.37
LDLR-203ENST00000535915 CCNA2P20248 432 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 AGXTP21549 392 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 GSTM2P28161 218 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 RAD23AP54725 363 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 TMBIM6P55061 237 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 CREMQ03060 361 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 DUOXA1Q1HG43 343 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 XKR6Q5GH73 641 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 ZNF648Q5T619 568 aaPredicted RBP12.76□□□□□ -0.37
LDLR-203ENST00000535915 KLHL35Q6PF15 583 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 ZNF621Q6ZSS3 439 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 Q6ZVL8 140 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 NCCRP1Q6ZVX7 275 aaPredicted RBP12.76□□□□□ -0.37
LDLR-203ENST00000535915 HSD11B1LQ7Z5J1 315 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 DCP2Q8IU60 420 aaKnown RBP12.76□□□□□ -0.37
LDLR-203ENST00000535915 SMYD1Q8NB12 490 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 OR2A12Q8NGT7 310 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 MAGEB10Q96LZ2 347 aaPredicted RBP12.76□□□□□ -0.37
LDLR-203ENST00000535915 YME1L1Q96TA2 773 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 MTERF1Q99551 399 aaKnown RBP12.76□□□□□ -0.37
LDLR-203ENST00000535915 GPBP1L1Q9HC44 474 aaPredicted RBP12.76□□□□□ -0.37
LDLR-203ENST00000535915 AASDHPPTQ9NRN7 309 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 EXD2Q9NVH0 621 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 OGDHLQ9ULD0 1010 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 ATP11BQ9Y2G3 1177 aa12.76□□□□□ -0.37
LDLR-203ENST00000535915 TDRKHQ9Y2W6 561 aaKnown RBP12.76□□□□□ -0.37
LDLR-203ENST00000535915 ABHD14A-ACY1A0A1B0GW23 586 aa12.75□□□□□ -0.37
LDLR-203ENST00000535915 COX7A2P14406 83 aa12.75□□□□□ -0.37
LDLR-203ENST00000535915 PPM1AP35813 382 aa12.75□□□□□ -0.37
LDLR-203ENST00000535915 PIGFQ07326 219 aa12.75□□□□□ -0.37
LDLR-203ENST00000535915 ABRQ12979 859 aa12.75□□□□□ -0.37
LDLR-203ENST00000535915 TUBA3CQ13748 450 aa12.75□□□□□ -0.37
LDLR-203ENST00000535915 GTF2H3Q13889 308 aa12.75□□□□□ -0.37
LDLR-203ENST00000535915 MSANTD1Q6ZTZ1 278 aa12.75□□□□□ -0.37
LDLR-203ENST00000535915 CCDC149Q6ZUS6 474 aa12.75□□□□□ -0.37
LDLR-203ENST00000535915 SERPINA11Q86U17 422 aa12.75□□□□□ -0.37
LDLR-203ENST00000535915 ZBP1Q9H171 429 aa12.75□□□□□ -0.37
LDLR-203ENST00000535915 TMEM39AQ9NV64 488 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms