RNA–Protein interactions for RNA: ENST00000533820.5

CAPN1-226, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 3,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-226ENST00000533820 PLD1Q13393 1074 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 USP39Q53GS9 565 aaKnown RBP18.81■□□□□ 0.6
CAPN1-226ENST00000533820 ANKS3Q6ZW76 656 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 HMG20AQ9NP66 347 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 INTS6Q9UL03 887 aaKnown RBP18.81■□□□□ 0.6
CAPN1-226ENST00000533820 PPT2Q9UMR5 302 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 OARD1Q9Y530 152 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 GMPPBQ9Y5P6 360 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 PLXNA3P51805 1871 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 GRXCR2A6NFK2 248 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 IFRD1O00458 451 aaPredicted RBP18.81■□□□□ 0.6
CAPN1-226ENST00000533820 GAPDHSO14556 408 aaPredicted RBP18.81■□□□□ 0.6
CAPN1-226ENST00000533820 RFXANKO14593 260 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 MAGP20916 626 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 ITPKAP23677 461 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 DAPP51397 102 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 MRPL58Q14197 206 aaKnown RBP18.81■□□□□ 0.6
CAPN1-226ENST00000533820 ZNF846Q147U1 533 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 CEP78Q5JTW2 689 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 ADGRF1Q5T601 910 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 CPZQ66K79 652 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 Q6ZPB1 254 aaPredicted RBP18.81■□□□□ 0.6
CAPN1-226ENST00000533820 RFLNAQ6ZTI6 216 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 RBFAQ8N0V3 343 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 COQ7Q99807 217 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 ELOVL6Q9H5J4 265 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 SERHLQ9NQF3 203 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 PDP1Q9P0J1 537 aaPredicted RBP18.81■□□□□ 0.6
CAPN1-226ENST00000533820 SATB2Q9UPW6 733 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 ZNF451Q9Y4E5 1061 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 PCDHB1Q9Y5F3 818 aa18.81■□□□□ 0.6
CAPN1-226ENST00000533820 CPSF4O95639 269 aaKnown RBP18.8■□□□□ 0.6
CAPN1-226ENST00000533820 ENPP1P22413 925 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 EPS8Q12929 822 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 SYT16Q17RD7 645 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 AHSA2Q719I0 299 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 ATG16L2Q8NAA4 619 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 PIK3C3Q8NEB9 887 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 APIPQ96GX9 242 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 TPD52L3Q96J77 140 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 CPPED1Q9BRF8 314 aaPredicted RBP18.8■□□□□ 0.6
CAPN1-226ENST00000533820 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.8■□□□□ 0.6
CAPN1-226ENST00000533820 NMRK2Q9NPI5 230 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 PCDHGA10Q9Y5H3 936 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 ITGALP20701 1170 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 CSKP41240 450 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 MASP1P48740 699 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 PRKCZQ05513 592 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 MAD2L1Q13257 205 aaPredicted RBP18.8■□□□□ 0.6
CAPN1-226ENST00000533820 TTC23LQ6PF05 361 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 ZNF621Q6ZSS3 439 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 TMEM132CQ8N3T6 1108 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 RDH12Q96NR8 316 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 USE1Q9NZ43 259 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 TAF4O00268 1085 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 FAM20BO75063 409 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 LCKP06239 509 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 ITIH1P19827 911 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 ANKRD13BQ86YJ7 626 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 BCL7CQ8WUZ0 217 aaPredicted RBP18.8■□□□□ 0.6
CAPN1-226ENST00000533820 PDLIM5Q96HC4 596 aaKnown RBP18.8■□□□□ 0.6
CAPN1-226ENST00000533820 ATG10Q9H0Y0 220 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 ATP13A3Q9H7F0 1226 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 KIF17Q9P2E2 1029 aa18.8■□□□□ 0.6
CAPN1-226ENST00000533820 MBD1Q9UIS9 605 aaPredicted RBP18.8■□□□□ 0.6
CAPN1-226ENST00000533820 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP18.8■□□□□ 0.67e-22■■■■■ 89.9
CAPN1-226ENST00000533820 TMEM189-UBE2V1I3L0A0 370 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 RECQL5O94762 991 aaPredicted RBP18.79■□□□□ 0.6
CAPN1-226ENST00000533820 BMP4P12644 408 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 PRKAR2AP13861 404 aaKnown RBP18.79■□□□□ 0.6
CAPN1-226ENST00000533820 BPIP17213 487 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 CD6P30203 668 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 RPIAP49247 311 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 SMU1Q2TAY7 513 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 PAGE2Q7Z2X7 111 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 P2RY8Q86VZ1 359 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 CHPFQ8IZ52 775 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 APCDD1Q8J025 514 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 SLC22A12Q96S37 553 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 H7C0S8 307 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 CLDN9O95484 217 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 GLULP15104 373 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 HNF1BP35680 557 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 GABARAPL2P60520 117 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 VLDLRP98155 873 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 CDH18Q13634 790 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 HIPK1Q86Z02 1210 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 FBXO22Q8NEZ5 403 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 PIH1D2Q8WWB5 315 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 BBS2Q9BXC9 721 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 SAMHD1Q9Y3Z3 626 aaKnown RBP18.79■□□□□ 0.6
CAPN1-226ENST00000533820 PMF1-BGLAPU3KQ54 211 aa18.79■□□□□ 0.6
CAPN1-226ENST00000533820 MTX2O75431 263 aa18.78■□□□□ 0.6
CAPN1-226ENST00000533820 KRT6AP02538 564 aa18.78■□□□□ 0.6
CAPN1-226ENST00000533820 KRT6BP04259 564 aa18.78■□□□□ 0.6
CAPN1-226ENST00000533820 RETP07949 1114 aa18.78■□□□□ 0.6
CAPN1-226ENST00000533820 COL6A1P12109 1028 aa18.78■□□□□ 0.6
CAPN1-226ENST00000533820 KRT6CP48668 564 aa18.78■□□□□ 0.6
CAPN1-226ENST00000533820 FKBP1BP68106 108 aa18.78■□□□□ 0.6
CAPN1-226ENST00000533820 GBX1Q14549 363 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms