RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CCDC138Q96M89 665 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 WWP1Q9H0M0 922 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 ALG9Q9H6U8 611 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 MVB12BQ9H7P6 319 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 PRDM8Q9NQV8 689 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 INTS9Q9NV88 658 aaKnown RBP7.19□□□□□ -1.26
CD44-228ENST00000528455 OXSMQ9NWU1 459 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 SLC17A7Q9P2U7 560 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 COPG2Q9UBF2 871 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 TBC1D29Q9UFV1 150 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 APOBEC3BQ9UH17 382 aaKnown RBP7.19□□□□□ -1.26
CD44-228ENST00000528455 LNPEPQ9UIQ6 1025 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 EMCNQ9ULC0 261 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 RNF112Q9ULX5 631 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 PDE10AQ9Y233 779 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 PLEKHM1Q9Y4G2 1056 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 OARD1Q9Y530 152 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 TNPO3Q9Y5L0 923 aaKnown RBP7.19□□□□□ -1.26
CD44-228ENST00000528455 CORINQ9Y5Q5 1042 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 TMEM131Q92545 1883 aa7.19□□□□□ -1.26
CD44-228ENST00000528455 TP53BP1Q12888 1972 aaPredicted RBP7.19□□□□□ -1.26
CD44-228ENST00000528455 A6NCN8 305 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 CDX4O14627 284 aaPredicted RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 FFAR2O15552 330 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 AQP9O43315 295 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 KDM1AO60341 852 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 TRIM13O60858 407 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 SMIM24O75264 130 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 IPO13O94829 963 aaKnown RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 SNUPNO95149 360 aaKnown RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 KCNK5O95279 499 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 CATP04040 527 aaKnown RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 BPGMP07738 259 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 ANXA6P08133 673 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 ANXA5P08758 320 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 CHN1P15882 459 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 ENGP17813 658 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 FSTP19883 344 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 AK4P27144 223 aaPredicted RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 RPL10P27635 214 aaKnown RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 PBLDP30039 288 aaPredicted RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 HPDP32754 393 aaPredicted RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 ACTR1BP42025 376 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 GLRBP48167 497 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 ALDH18A1P54886 795 aaKnown RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 ACTR1AP61163 376 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 NFKB2Q00653 900 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 IL9RQ01113 521 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 KRT33BQ14525 404 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 ARHGAP19Q14CB8 494 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 OR4D1Q15615 310 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 TSNQ15631 228 aaKnown RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 RPE65Q16518 533 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 PPP1R3AQ16821 1122 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 HLA-BQ31612 363 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 ZNF542PQ5EBM4 170 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 SULT1C3Q6IMI6 304 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 ZYG11AQ6WRX3 759 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 DBX2Q6ZNG2 339 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 PIWIL4Q7Z3Z4 852 aaKnown RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 C17orf82Q86X59 251 aaPredicted RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 NUDCD3Q8IVD9 361 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 RBM12BQ8IXT5 1001 aaKnown RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 TCAIMQ8N3R3 496 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 SLC25A45Q8N413 288 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 LILRA3Q8N6C8 439 aaPredicted RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 AVL9Q8NBF6 648 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 FAM46DQ8NEK8 389 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 OR9A1PQ8NGU1 263 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 OR6Y1Q8NGX8 325 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 CFAP61Q8NHU2 1237 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 RAB3IL1Q8TBN0 382 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 MDM1Q8TC05 714 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 LMX1AQ8TE12 382 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 SETD7Q8WTS6 366 aaKnown RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 ATL1Q8WXF7 558 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 GATA6Q92908 595 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 C12orf66Q96MD2 445 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 PSMG3-AS1Q96PY0 264 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 FAM111AQ96PZ2 611 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 FERD3LQ96RJ6 166 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 LRRC61Q9BV99 259 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 DUSP23Q9BVJ7 150 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 GTPBP2Q9BX10 602 aaKnown RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 TRIT1Q9H3H1 467 aaKnown RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 TCEAL2Q9H3H9 227 aaPredicted RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 OSGEPL1Q9H4B0 414 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 TAAR2Q9P1P5 351 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 CPSF2Q9P2I0 782 aaKnown RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 ZNF624Q9P2J8 865 aaPredicted RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 PTBP2Q9UKA9 531 aaKnown RBP7.18□□□□□ -1.26
CD44-228ENST00000528455 ADAMTS6Q9UKP5 1117 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 IKZF3Q9UKT9 509 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 PSMD13Q9UNM6 376 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 KCNK6Q9Y257 313 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 ASF1AQ9Y294 204 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 DNAJC16Q9Y2G8 782 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 WDR37Q9Y2I8 494 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 ADAMTS9Q9P2N4 1935 aa7.18□□□□□ -1.26
CD44-228ENST00000528455 ATXN2Q99700 1313 aaKnown RBP7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms