RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 C2CD6Q53TS8 623 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 PAN3Q58A45 887 aaKnown RBP5.67□□□□□ -1.5
CD44-225ENST00000527326 NOMO2Q5JPE7 1267 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 SLC35F1Q5T1Q4 408 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 ANKRD22Q5VYY1 191 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 SLC25A25Q6KCM7 469 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 ANKRD54Q6NXT1 300 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 PLET1Q6UQ28 207 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 DPP8Q6V1X1 898 aaPredicted RBP5.67□□□□□ -1.5
CD44-225ENST00000527326 RTL4Q6ZR62 310 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 FAM196AQ6ZSG2 479 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 CYS1Q717R9 158 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 PGAP1Q75T13 922 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 OTOP1Q7RTM1 612 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 HSD17B13Q7Z5P4 300 aaPredicted RBP5.67□□□□□ -1.5
CD44-225ENST00000527326 FAM160B2Q86V87 743 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 METTL23Q86XA0 190 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 TMC8Q8IU68 726 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 SIAH1Q8IUQ4 282 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 MCATQ8IVS2 390 aaKnown RBP5.67□□□□□ -1.5
CD44-225ENST00000527326 FAM71AQ8IYT1 594 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 CARFQ8N187 725 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 SLC43A2Q8N370 569 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 PCDH20Q8N6Y1 951 aaKnown RBP5.67□□□□□ -1.5
CD44-225ENST00000527326 FAM181AQ8N9Y4 354 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 METTL6Q8TCB7 284 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 SFT2D1Q8WV19 159 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 SLC5A11Q8WWX8 675 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 KIAA1143Q96AT1 154 aaPredicted RBP5.67□□□□□ -1.5
CD44-225ENST00000527326 MTERF3Q96E29 417 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 ELP4Q96EB1 424 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 FAM46AQ96IP4 442 aaKnown RBP5.67□□□□□ -1.5
CD44-225ENST00000527326 WDFY2Q96P53 400 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 APBA2Q99767 749 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 P2RY13Q9BPV8 354 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 HOPXQ9BPY8 73 aaPredicted RBP5.67□□□□□ -1.5
CD44-225ENST00000527326 TREX2Q9BQ50 279 aaPredicted RBP5.67□□□□□ -1.5
CD44-225ENST00000527326 CCM2Q9BSQ5 444 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 TBCDQ9BTW9 1192 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 BEX2Q9BXY8 128 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 ITPAQ9BY32 194 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 FGFBP2Q9BYJ0 223 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 REG4Q9BYZ8 158 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 PRRG3Q9BZD7 231 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 ZNF436Q9C0F3 470 aaPredicted RBP5.67□□□□□ -1.5
CD44-225ENST00000527326 OPA3Q9H6K4 179 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 DBNDD1Q9H9R9 158 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 LGR6Q9HBX8 967 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 MRPL47Q9HD33 250 aaKnown RBP5.67□□□□□ -1.5
CD44-225ENST00000527326 EMC7Q9NPA0 242 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 TLR9Q9NR96 1032 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 MYEF2Q9P2K5 600 aaKnown RBP5.67□□□□□ -1.5
CD44-225ENST00000527326 DNAJB9Q9UBS3 223 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 RUVBL2Q9Y230 463 aaKnown RBP5.67□□□□□ -1.5
CD44-225ENST00000527326 MTF2Q9Y483 593 aaPredicted RBP5.67□□□□□ -1.5
CD44-225ENST00000527326 NUP188Q5SRE5 1749 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 ASTN1O14525 1302 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 CNTNAP4Q9C0A0 1308 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 SIPA1L3O60292 1781 aaPredicted RBP5.67□□□□□ -1.5
CD44-225ENST00000527326 RBBP6Q7Z6E9 1792 aaKnown RBP5.67□□□□□ -1.5
CD44-225ENST00000527326 CEP350Q5VT06 3117 aa5.67□□□□□ -1.5
CD44-225ENST00000527326 AKAP11Q9UKA4 1901 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 hCG_1818297A0A087WSY0 165 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 A0A1B0GW55 424 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 HMX2A2RU54 273 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 OR2A25A4D2G3 310 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 FAM149AA5PLN7 773 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 WTIPA6NIX2 430 aaPredicted RBP5.66□□□□□ -1.5
CD44-225ENST00000527326 WASHC1A8K0Z3 465 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 PRSS47A8MTI9 375 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 KCNU1A8MYU2 1149 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 hCG_1984214I3L0E3 225 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 UBXN8O00124 270 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 SLC28A1O00337 649 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 SULT1C2O00338 296 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 NRP1O14786 923 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 DSCR3O14972 297 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 ADAMTS3O15072 1205 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 PMM2O15305 246 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 RGS10O43665 173 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 ORC5O43913 435 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 HCN1O60741 890 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 TULP3O75386 442 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 SLC43A1O75387 559 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 VPS26AO75436 327 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 EIF3GO75821 320 aaKnown RBP eCLIP5.66□□□□□ -1.5
CD44-225ENST00000527326 KLHL18O94889 574 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 LALBAP00709 142 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 DNTTP04053 509 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 RPLP0P05388 317 aaKnown RBP5.66□□□□□ -1.5
CD44-225ENST00000527326 PGRP06401 933 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 FCER2P06734 321 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 SERPINF2P08697 491 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 CD63P08962 238 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 ACAA1P09110 424 aaPredicted RBP5.66□□□□□ -1.5
CD44-225ENST00000527326 ZDHHC11BP0C7U3 371 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 DUX4L2P0CJ85 424 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 DUX4L3P0CJ86 424 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 DUX4L4P0CJ87 422 aa5.66□□□□□ -1.5
CD44-225ENST00000527326 DUX4L5P0CJ88 424 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms