RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 TSPAN8P19075 237 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 CMPK1P30085 196 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 ETV4P43268 484 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 E2F1Q01094 437 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 ILKQ13418 452 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 HSP90B2PQ58FF3 399 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 PHF19Q5T6S3 580 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 HES3Q5TGS1 186 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 CACHD1Q5VU97 1274 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 FAM219BQ5XKK7 198 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 ICE2Q659A1 982 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 TMEM71Q6P5X7 295 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 LCTLQ6UWM7 567 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 LRRC70Q7Z2Q7 622 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 RAB44Q7Z6P3 723 aaPredicted RBP13.22□□□□□ -0.29
CD44-224ENST00000526669 PLXDC1Q8IUK5 500 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 TEX9Q8N6V9 391 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 CCNYL1Q8N7R7 359 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 RCBTB1Q8NDN9 531 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 OR2A1Q8NGT9 310 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 RDH11Q8TC12 318 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 ZDHHC12Q96GR4 267 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 CCDC74BQ96LY2 380 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 MRPS30Q9NP92 439 aaKnown RBP13.22□□□□□ -0.29
CD44-224ENST00000526669 NKIRAS1Q9NYS0 192 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 EPHA6Q9UF33 1036 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 APOBEC2Q9Y235 224 aaKnown RBP13.22□□□□□ -0.29
CD44-224ENST00000526669 ANGPTL3Q9Y5C1 460 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 PCDHGA1Q9Y5H4 931 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 ENTPD2Q9Y5L3 495 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 IGHV5-51A0A0C4DH38 117 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 IGHV5-10-1A0A0J9YXX1 117 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 TLCD2A6NGC4 264 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 SLC9B1P1A6NJY1 282 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 E7EQ34 232 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 STX16-NPEPL1H3BU86 382 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 K7EPI3 171 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 MATN2O00339 956 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 STX16O14662 325 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 C9P02748 559 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 RPS17P08708 135 aaKnown RBP13.21□□□□□ -0.29
CD44-224ENST00000526669 NPPBP16860 134 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 MAGP20916 626 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 CCND1P24385 295 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 GGT5P36269 586 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 CCR10P46092 362 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 SERPINB4P48594 390 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 WDR4P57081 412 aaKnown RBP13.21□□□□□ -0.29
CD44-224ENST00000526669 PPP2R2AP63151 447 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 NFKB2Q00653 900 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 MEF2AQ02078 507 aaPredicted RBP13.21□□□□□ -0.29
CD44-224ENST00000526669 CDC16Q13042 620 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 GTF2H2Q13888 395 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 PCBP2Q15366 365 aaKnown RBP eCLIP13.21□□□□□ -0.29
CD44-224ENST00000526669 RBBP7Q16576 425 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 SLC5A12Q1EHB4 618 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 UNC50Q53HI1 259 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 ZNF678Q5SXM1 525 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 GTF2H2CQ6P1K8 395 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 WDR74Q6RFH5 385 aaPredicted RBP13.21□□□□□ -0.29
CD44-224ENST00000526669 RBM44Q6ZP01 1051 aaKnown RBP13.21□□□□□ -0.29
CD44-224ENST00000526669 ZCCHC23Q6ZST2 131 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 GOLGA7Q7Z5G4 137 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 ADCK2Q7Z695 626 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 TMPRSS11BQ86T26 416 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 C17orf64Q86WR6 236 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 SLC22A9Q8IVM8 553 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 SLITRK4Q8IW52 837 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 KLHDC8AQ8IYD2 350 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 OR2L3Q8NG85 312 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 SLC22A18Q96BI1 424 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 TWSG1Q9GZX9 223 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 RAB33BQ9H082 229 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 OXSMQ9NWU1 459 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 PCTPQ9UKL6 214 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 CROCCQ5TZA2 2017 aa13.21□□□□□ -0.29
CD44-224ENST00000526669 SUPT7LO94864 414 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 CCNDBP1O95273 360 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 MT-CO3P00414 261 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 BPGMP07738 259 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 THRAP10827 490 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 NR1D1P20393 614 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 ATP1A2P50993 1020 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 PDX1P52945 283 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 PRKAA2P54646 552 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 CDH13P55290 713 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 HERVK_113P63132 956 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 GPS2Q13227 327 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 SQSTM1Q13501 440 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 ZIC1Q15915 447 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 PDK4Q16654 411 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 DEFB110Q30KQ9 67 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 CATSPEREQ5SY80 951 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 LIPMQ5VYY2 423 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 FCRL6Q6DN72 434 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 FIGLAQ6QHK4 219 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 MARCH9Q86YJ5 346 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 PLD3Q8IV08 490 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 NUDCD3Q8IVD9 361 aa13.2□□□□□ -0.3
CD44-224ENST00000526669 DCBLD1Q8N8Z6 715 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms