RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 COX19Q49B96 90 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 XKR3Q5GH77 459 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 KRBOX4Q5JUW0 171 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 N4BP2L1Q5TBK1 243 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 MAP1SQ66K74 1059 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 ZNF746Q6NUN9 644 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 BLOC1S3Q6QNY0 202 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 VSTM1Q6UX27 236 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 AGMOQ6ZNB7 445 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 MRPL10Q7Z7H8 261 aaKnown RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 APOBEC3FQ8IUX4 373 aaKnown RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 EID2Q8N6I1 236 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 IQCF1Q8N6M8 205 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 EFCAB3Q8N7B9 438 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 OR13C2Q8NGS9 318 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ZSCAN18Q8TBC5 510 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 TBC1D16Q8TBP0 767 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 RNF128Q8TEB7 428 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 DCAF4Q8WV16 495 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TNFRSF25Q93038 417 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 DMRTB1Q96MA1 342 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 KREMEN1Q96MU8 473 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 NOL4LQ96MY1 436 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 BTBD2Q9BX70 525 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 CFHR5Q9BXR6 569 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 PCDHAC1Q9H158 963 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ABCG4Q9H172 646 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ACSS3Q9H6R3 686 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 BCO1Q9HAY6 547 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TMEM8AQ9HCN3 771 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 SMPD4Q9NXE4 827 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ZDHHC7Q9NXF8 308 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 NUDT4Q9NZJ9 180 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 LUZP4Q9P127 313 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 GNG13Q9P2W3 67 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 PRKAG3Q9UGI9 489 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 PCDHB3Q9Y5E6 796 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 MN1Q10571 1320 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 TCAF2A6NFQ2 919 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 MANSC4A6NHS7 340 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 NPIPA5E9PKD4 350 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 NPIPA3F8WFD2 350 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 NPHS1O60500 1241 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 JRKO75564 520 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 PROSCO94903 275 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TGFB1P01137 390 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 GYPCP04921 128 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 IGFBP1P08833 259 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 AKR1B1P15121 316 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ACO1P21399 889 aaKnown RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 COMTP21964 271 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 KDELR1P24390 212 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ACVR2AP27037 513 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 CDH5P33151 784 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 OR3A3P47888 321 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 OR3A2P47893 321 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 RHBDL3P58872 404 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TAS2R39P59534 338 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TLE2Q04725 743 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 PRKCDQ05655 676 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 FMR1Q06787 632 aaKnown RBP eCLIP3.5□□□□□ -1.85
USP53-205ENST00000509769 PPIGQ13427 754 aaKnown RBP eCLIP3.5□□□□□ -1.85
USP53-205ENST00000509769 MTM1Q13496 603 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 BAATQ14032 418 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 ABRAXAS2Q15018 415 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TGFBIQ15582 683 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ZNHIT3Q15649 155 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 NRF1Q16656 503 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 QPCTQ16769 361 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 IQCJQ1A5X6 159 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ALG10Q5BKT4 473 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 DPY19L2P1Q6NXN4 242 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 NIPAL3Q6P499 406 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 FAM173BQ6P4H8 233 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TLDC1Q6P9B6 456 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TFAP2DQ7Z6R9 452 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 IFNL3Q8IZI9 196 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TCTE3Q8IZS6 198 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 IQCKQ8N0W5 287 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 C7orf31Q8N865 590 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 NHLRC2Q8NBF2 726 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 OR2W6PQ8NHA6 318 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 STAG3L4Q8TBR4 150 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 FCAMRQ8WWV6 532 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TMEM18Q96B42 140 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ARMC5Q96C12 935 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TLCD1Q96CP7 247 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 DUS3LQ96G46 650 aaKnown RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 MASTLQ96GX5 879 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 MBOAT7Q96N66 472 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ZNF649Q9BS31 505 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 FNDC11Q9BVV2 318 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TTLL2Q9BWV7 592 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 SUCNR1Q9BXA5 334 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 KATNBL1Q9H079 304 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 SLC25A32Q9H2D1 315 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 COPRSQ9NQ92 184 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 MIEF1Q9NQG6 463 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TLR8Q9NR97 1041 aaKnown RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 ZNF446Q9NWS9 450 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms