RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 STSP08842 583 aa20.09■□□□□ 0.81
SQSTM1-210ENST00000506042 ELAVL4P26378 380 aaKnown RBP20.09■□□□□ 0.81
SQSTM1-210ENST00000506042 GDF10P55107 478 aa20.09■□□□□ 0.81
SQSTM1-210ENST00000506042 KLC1Q07866 573 aa20.09■□□□□ 0.81
SQSTM1-210ENST00000506042 FAM20CQ8IXL6 584 aa20.09■□□□□ 0.81
SQSTM1-210ENST00000506042 OR2L3Q8NG85 312 aa20.09■□□□□ 0.81
SQSTM1-210ENST00000506042 IL17FQ96PD4 163 aa20.09■□□□□ 0.81
SQSTM1-210ENST00000506042 MIPEPQ99797 713 aa20.09■□□□□ 0.81
SQSTM1-210ENST00000506042 IL22Q9GZX6 179 aa20.09■□□□□ 0.81
SQSTM1-210ENST00000506042 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP20.09■□□□□ 0.81
SQSTM1-210ENST00000506042 BFARQ9NZS9 450 aa20.09■□□□□ 0.81
SQSTM1-210ENST00000506042 DUSP10Q9Y6W6 482 aa20.09■□□□□ 0.81
SQSTM1-210ENST00000506042 PRSS44E7EML9 344 aa20.08■□□□□ 0.81
SQSTM1-210ENST00000506042 CTSBP07858 339 aa20.08■□□□□ 0.81
SQSTM1-210ENST00000506042 RPA3P35244 121 aaPredicted RBP20.08■□□□□ 0.81
SQSTM1-210ENST00000506042 EMP2P54851 167 aa20.08■□□□□ 0.81
SQSTM1-210ENST00000506042 C1QL3Q5VWW1 255 aa20.08■□□□□ 0.81
SQSTM1-210ENST00000506042 COX15Q7KZN9 410 aa20.08■□□□□ 0.81
SQSTM1-210ENST00000506042 METTL27Q8N6F8 245 aaPredicted RBP20.08■□□□□ 0.81
SQSTM1-210ENST00000506042 SLX1AQ9BQ83 275 aa20.08■□□□□ 0.81
SQSTM1-210ENST00000506042 MENTQ9BUN1 341 aa20.08■□□□□ 0.81
SQSTM1-210ENST00000506042 DRG1Q9Y295 367 aaKnown RBP20.08■□□□□ 0.81
SQSTM1-210ENST00000506042 CACNA1DQ01668 2161 aa20.08■□□□□ 0.8
SQSTM1-210ENST00000506042 CREBBPQ92793 2442 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 A0A0J9YVX5 310 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 ALOX12BO75342 701 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 BMP10O95393 424 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 C1orf105O95561 183 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 SERPINA7P05543 415 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 HEXBP07686 556 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 RPS3P23396 243 aaKnown RBP eCLIP20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 MCM3P25205 808 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 ATP5DP30049 168 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 NDUFA9Q16795 377 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 ANKRD20A4Q4UJ75 823 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 GARNL3Q5VVW2 1013 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 RNF44Q7L0R7 432 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 FJX1Q86VR8 437 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 VRK3Q8IV63 474 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 DNAJB8Q8NHS0 232 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 METTL21AQ8WXB1 218 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 PHF12Q96QT6 1004 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 EBNA1BP2Q99848 306 aaKnown RBP20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 CHST11Q9NPF2 352 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 MKKSQ9NPJ1 570 aaPredicted RBP20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 TRPC4Q9UBN4 977 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 SLC2A6Q9UGQ3 507 aa20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 PRRC2CQ9Y520 2896 aaKnown RBP20.07■□□□□ 0.8
SQSTM1-210ENST00000506042 ARHGAP10A1A4S6 786 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 RCCD1A6NED2 376 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 E5RI56 91 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 MASP2O00187 686 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 E2F3O00716 465 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 LIASO43766 372 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 CATP04040 527 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 PAMP19021 973 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 NPY2RP49146 381 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 EIF3BP55884 814 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 ART3Q13508 389 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 DSG2Q14126 1118 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 ARHGAP19Q14CB8 494 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 ABHD17BQ5VST6 288 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 TMEM207Q6UWW9 146 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 GFRALQ6UXV0 394 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 SRRM1Q8IYB3 904 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 PRSS58Q8IYP2 241 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 KRT222Q8N1A0 295 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 MCOLN3Q8TDD5 553 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 ZDHHC19Q8WVZ1 309 aaPredicted RBP20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 SMPDL3AQ92484 453 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 TCF12Q99081 682 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 TRIM56Q9BRZ2 755 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 TSGA10Q9BZW7 698 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 MRPS30Q9NP92 439 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 EIF2B3Q9NR50 452 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 ABI3Q9P2A4 366 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 PTGFRNQ9P2B2 879 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 CIDEBQ9UHD4 219 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 CSAG2Q9Y5P2 127 aa20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 KLF2Q9Y5W3 355 aaPredicted RBP20.06■□□□□ 0.8
SQSTM1-210ENST00000506042 SNRNP200O75643 2136 aaKnown RBP20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 IQCF5A8MTL0 148 aa20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 GOLGA6L6A8MZA4 724 aa20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 IDSB3KWA1 339 aa20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 ZG16O60844 167 aa20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 FTCDO95954 541 aa20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 PRR35P0CG20 571 aa20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 FOXL2P58012 376 aa20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 SARNPP82979 210 aaKnown RBP20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 GRB7Q14451 532 aa20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 TTLL9Q3SXZ7 439 aa20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 MEI1Q5TIA1 1274 aa20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 RPTNQ6XPR3 784 aa20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 ZNF534Q76KX8 674 aa20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 MAIP1Q8WWC4 291 aa20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 NR4A3Q92570 626 aa20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 HAS2Q92819 552 aa20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 RELTQ969Z4 430 aa20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 BAG1Q99933 345 aaPredicted RBP20.05■□□□□ 0.8
SQSTM1-210ENST00000506042 DPH7Q9BTV6 452 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms