RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 HNRNPA1L2Q32P51 320 aaKnown RBP13.7□□□□□ -0.22
TCOF1-207ENST00000504761 PARS2Q7L3T8 475 aaKnown RBP13.7□□□□□ -0.22
TCOF1-207ENST00000504761 RELTQ969Z4 430 aa13.7□□□□□ -0.22
TCOF1-207ENST00000504761 FNDC11Q9BVV2 318 aa13.7□□□□□ -0.22
TCOF1-207ENST00000504761 TPSD1Q9BZJ3 242 aa13.7□□□□□ -0.22
TCOF1-207ENST00000504761 COQ10BQ9H8M1 238 aa13.7□□□□□ -0.22
TCOF1-207ENST00000504761 SEMA3GQ9NS98 782 aa13.7□□□□□ -0.22
TCOF1-207ENST00000504761 INTS7Q9NVH2 962 aaKnown RBP13.7□□□□□ -0.22
TCOF1-207ENST00000504761 PDP1Q9P0J1 537 aaPredicted RBP13.7□□□□□ -0.22
TCOF1-207ENST00000504761 MRPS33Q9Y291 106 aaKnown RBP13.7□□□□□ -0.22
TCOF1-207ENST00000504761 TESMINQ9Y4I5 508 aa13.7□□□□□ -0.22
TCOF1-207ENST00000504761 SLC22A2O15244 555 aa13.7□□□□□ -0.22
TCOF1-207ENST00000504761 RNGTTO60942 597 aaKnown RBP13.7□□□□□ -0.22
TCOF1-207ENST00000504761 SLC16A8O95907 504 aa13.7□□□□□ -0.22
TCOF1-207ENST00000504761 HOXC13P31276 330 aa13.7□□□□□ -0.22
TCOF1-207ENST00000504761 NUP107P57740 925 aa13.7□□□□□ -0.22
TCOF1-207ENST00000504761 HERC3Q15034 1050 aa13.7□□□□□ -0.22
TCOF1-207ENST00000504761 ADRM1Q16186 407 aa13.7□□□□□ -0.22
TCOF1-207ENST00000504761 OSBPL11Q9BXB4 747 aa13.7□□□□□ -0.22
TCOF1-207ENST00000504761 REXO4Q9GZR2 422 aaKnown RBP13.7□□□□□ -0.22
TCOF1-207ENST00000504761 TRIM39Q9HCM9 518 aa13.7□□□□□ -0.22
TCOF1-207ENST00000504761 ADAP2Q9NPF8 381 aa13.7□□□□□ -0.22
TCOF1-207ENST00000504761 ZIM2Q9NZV7 527 aa13.7□□□□□ -0.22
TCOF1-207ENST00000504761 OARD1Q9Y530 152 aa13.7□□□□□ -0.22
TCOF1-207ENST00000504761 IGLV3-10A0A075B6K4 115 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 JUNP05412 331 aaKnown RBP13.69□□□□□ -0.22
TCOF1-207ENST00000504761 S100A5P33763 92 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 RYKP34925 604 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 BLKP51451 505 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 RPS21P63220 83 aaKnown RBP13.69□□□□□ -0.22
TCOF1-207ENST00000504761 EMX2Q04743 252 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 SORT1Q99523 831 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 KRCC1Q9NPI7 259 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-207ENST00000504761 NDUFA13Q9P0J0 144 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 CA14Q9ULX7 337 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 PDE10AQ9Y233 779 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 ARPC2O15144 300 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 NDUFB5O43674 189 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 ZBTB11O95625 1053 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-207ENST00000504761 PDYNP01213 254 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 ENGP17813 658 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 CPN2P22792 545 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 ERVPABLB-1P60509 514 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 COPZ1P61923 177 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 SLC9A5Q14940 896 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 USP39Q53GS9 565 aaKnown RBP13.69□□□□□ -0.22
TCOF1-207ENST00000504761 DEPDC1Q5TB30 811 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 GPR174Q9BXC1 333 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 SLC29A3Q9BZD2 475 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 POLR1BQ9H9Y6 1135 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 GDE1Q9NZC3 331 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 IKZF3Q9UKT9 509 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 TPRKBQ9Y3C4 175 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 GOLGB1Q14789 3259 aaKnown RBP13.69□□□□□ -0.22
TCOF1-207ENST00000504761 KNTC1P50748 2209 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 LINC00854A0A1B0GVQ3 168 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 GMFGO60234 142 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 ITGA2P17301 1181 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 LSM3P62310 102 aaKnown RBP13.69□□□□□ -0.22
TCOF1-207ENST00000504761 GNA13Q14344 377 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 ABRAXAS1Q6UWZ7 409 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 TICAM1Q8IUC6 712 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 LMNTD1Q8N9Z9 388 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 MAT2BQ9NZL9 334 aa13.69□□□□□ -0.22
TCOF1-207ENST00000504761 SNTNA6NMZ2 147 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 AP3D1O14617 1153 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 C8orf89P0DMQ9 161 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 MAGEA10P43363 369 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-207ENST00000504761 CTSCP53634 463 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 STXBP1P61764 594 aaKnown RBP13.68□□□□□ -0.22
TCOF1-207ENST00000504761 DOC2AQ14183 400 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 MANEALQ5VSG8 457 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 OR2A12Q8NGT7 310 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 PIH1D2Q8WWB5 315 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 RAB7BQ96AH8 199 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 SPATA5L1Q9BVQ7 753 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 SUCOQ9UBS9 1254 aaKnown RBP13.68□□□□□ -0.22
TCOF1-207ENST00000504761 PCTPQ9UKL6 214 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 DLGAP4Q9Y2H0 992 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 IGLV3-25P01717 112 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 ALPPL2P10696 532 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 TIMP2P16035 220 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 POLR2CP19387 275 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-207ENST00000504761 DHPSP49366 369 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-207ENST00000504761 PNLIPRP1P54315 467 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 DYNC1I2Q13409 638 aaKnown RBP13.68□□□□□ -0.22
TCOF1-207ENST00000504761 TSACCQ96A04 125 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-207ENST00000504761 ASB9Q96DX5 294 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 ZSWIM3Q96MP5 696 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 ZNF229Q9UJW7 825 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 NOBOXO60393 691 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 CFIP05156 583 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 GPIP06744 558 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 CCNYL3P0C7X3 344 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 RXRGP48443 463 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 TBPL1P62380 186 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 LIPIQ6XZB0 460 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 NUDT13Q86X67 352 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 ZDHHC21Q8IVQ6 265 aa13.68□□□□□ -0.22
TCOF1-207ENST00000504761 TEX26Q8N6G2 289 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms