RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	DCHS2	Q6V1P9	2916 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	ZNF106	Q9H2Y7	1883 aa	Known RBP	4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	CSPG4	Q6UVK1	2322 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	ZFC3H1	O60293	1989 aa	Known RBP	4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	COL6A5	A8TX70	2615 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	RP1	P56715	2156 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	IGLV3-10	A0A075B6K4	115 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981		A0A0D9SEW6	157 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	C1QTNF3-AMACR	E9PGA6	284 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981		F5H697	171 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981		K7ESM1	405 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	PSMA7	O14818	248 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	MCF2L	O15068	1137 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	MUSK	O15146	869 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	SMAD6	O43541	496 aa	Known RBP	4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	SPRY2	O43597	315 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	SNAP91	O60641	907 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	HSF2BP	O75031	334 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	MFAP3L	O75121	409 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	ERAL1	O75616	437 aa	Known RBP	4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	ZMPSTE24	O75844	475 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	NEBL	O76041	1014 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	CNTN5	O94779	1100 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	TNFSF15	O95150	251 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	MOCS3	O95396	460 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	GPANK1	O95872	356 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	PNMA6A	P0CW24	399 aa	Predicted RBP	4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	THEGL	P0DJG4	465 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	TMEM225B	P0DP42	221 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	NR2F1	P10589	423 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	NR1D1	P20393	614 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	TGM2	P21980	687 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	HNRNPA2B1	P22626	353 aa	Known RBP	4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	MSX2	P35548	267 aa	Predicted RBP	4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	RPS19	P39019	145 aa	Known RBP	4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	GARS	P41250	739 aa	Known RBP	4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	SERPINH1	P50454	418 aa	Known RBP	4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	SLURP1	P55000	103 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	CLDN2	P57739	230 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	TAS2R50	P59544	299 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	ARF5	P84085	180 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	SULT2A1	Q06520	285 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	TBL3	Q12788	808 aa	Known RBP	4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	DRAP1	Q14919	205 aa	Predicted RBP	4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	CYP2A13	Q16696	494 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	VMAC	Q2NL98	169 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	RABGAP1L	Q5R372	815 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	OR6B2	Q6IFH4	312 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	SLC30A6	Q6NXT4	461 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	GJB7	Q6PEY0	223 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	TRIM65	Q6PJ69	517 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	SLC26A9	Q7LBE3	791 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	MAVS	Q7Z434	540 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	PTAR1	Q7Z6K3	402 aa	Predicted RBP	4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	DSG4	Q86SJ6	1040 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	PARG	Q86W56	976 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	HORMAD1	Q86X24	394 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	DEFB106A	Q8N104	65 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	LSMEM2	Q8N112	164 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	WDTC1	Q8N5D0	677 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	LINC01356	Q8N9X3	169 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	NT5C3B	Q969T7	300 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	TMEM125	Q96AQ2	219 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	FAM136A	Q96C01	138 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	RADIL	Q96JH8	1075 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	APOLD1	Q96LR9	279 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	NAP1L5	Q96NT1	182 aa	Predicted RBP	4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	RPRD1A	Q96P16	312 aa	Predicted RBP	4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	OR14A2	Q96R54	314 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	NPY6R	Q99463	290 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	TSG101	Q99816	390 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	FEM1A	Q9BSK4	669 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	LRRC61	Q9BV99	259 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	REXO4	Q9GZR2	422 aa	Known RBP	4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	SCAND2P	Q9GZW5	306 aa	Predicted RBP	4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	THAP9	Q9H5L6	903 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	SIX2	Q9NPC8	291 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	TRIM36	Q9NQ86	728 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	ASNSD1	Q9NWL6	643 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	RMND1	Q9NWS8	449 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	ARHGEF38	Q9NXL2	777 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	VANGL2	Q9ULK5	521 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	SLC12A4	Q9UP95	1085 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	ITM2B	Q9Y287	266 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	SNX10	Q9Y5X0	201 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	SNX8	Q9Y5X2	465 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	SLC30A1	Q9Y6M5	507 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	TRPM6	Q9BX84	2022 aa		4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	TDRD6	O60522	2096 aa	Known RBP	4.22	□□□□□ -1.73
VPS52-222	ENST00000495981	FBN1	P35555	2871 aa	Known RBP	4.21	□□□□□ -1.73
VPS52-222	ENST00000495981	TBC1D3D	A0A087WVF3	549 aa		4.21	□□□□□ -1.74
VPS52-222	ENST00000495981	TBC1D3I	A0A087WXS9	549 aa		4.21	□□□□□ -1.74
VPS52-222	ENST00000495981	TBC1D3E	A0A087X179	549 aa		4.21	□□□□□ -1.74
VPS52-222	ENST00000495981	TBC1D3K	A0A087X1G2	549 aa		4.21	□□□□□ -1.74
VPS52-222	ENST00000495981	SPTY2D1-AS1	A0A0U1RR47	76 aa		4.21	□□□□□ -1.74
VPS52-222	ENST00000495981	TBC1D3F	A6NER0	549 aa	Predicted RBP	4.21	□□□□□ -1.74
VPS52-222	ENST00000495981	GAGE10	A6NGK3	116 aa		4.21	□□□□□ -1.74
VPS52-222	ENST00000495981	C17orf100	A8MU93	164 aa		4.21	□□□□□ -1.74
VPS52-222	ENST00000495981		A8MVJ9	347 aa		4.21	□□□□□ -1.74
VPS52-222	ENST00000495981	TBC1D3L	B9A6J9	549 aa		4.21	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms