RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	DLG3	Q92796	817 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	SLC22A18	Q96BI1	424 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	SERPINB12	Q96P63	405 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	RAB11FIP5	Q9BXF6	653 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	SLC26A1	Q9H2B4	701 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	FBXO6	Q9NRD1	293 aa	Predicted RBP	11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	TACC2	O95359	2948 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	DCHS2	Q6V1P9	2916 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	VSTM2B	A6NLU5	285 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	AGPS	O00116	658 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	MYO1C	O00159	1063 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	KIF5C	O60282	957 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	VPS4B	O75351	444 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	ESR1	P03372	595 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	PKM	P14618	531 aa	Known RBP	11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	MMP11	P24347	488 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	SLC1A2	P43004	574 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	ADAR	P55265	1226 aa	Known RBP	11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	SOX8	P57073	446 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	MPP1	Q00013	466 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	GRM7	Q14831	915 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	CYP1B1	Q16678	543 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	HKDC1	Q2TB90	917 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	KLHL38	Q2WGJ6	581 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	ANKRD20A4	Q4UJ75	823 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	RNF187	Q5TA31	235 aa	Predicted RBP	11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	NEPRO	Q6NW34	567 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	CASC4	Q6P4E1	433 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	CUZD1	Q86UP6	607 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	REXO1L1P	Q8IX06	675 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	GSDMB	Q8TAX9	411 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	COG1	Q8WTW3	980 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	MAIP1	Q8WWC4	291 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	SNRNP40	Q96DI7	357 aa	Known RBP	11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	FER1L6-AS2	Q96M78	137 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	IP6K3	Q96PC2	410 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	PKP4	Q99569	1192 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	DPH7	Q9BTV6	452 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	WDR54	Q9H977	334 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	SLAMF7	Q9NQ25	335 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	INTS7	Q9NVH2	962 aa	Known RBP	11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	ASF1B	Q9NVP2	202 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	SPATA7	Q9P0W8	599 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	CDC23	Q9UJX2	597 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	VPS4A	Q9UN37	437 aa		11.12	□□□□□ -0.63
VTI1A-208	ENST00000494728	CACNA1D	Q01668	2161 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	APC	P25054	2843 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	FAM237B	A0A1B0GVD1	139 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	HYKK	A2RU49	373 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	TARM1	B6A8C7	271 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	AP3B1	O00203	1094 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	PEX12	O00623	359 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	KPNA5	O15131	536 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	P2RX6	O15547	441 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	BANF1	O75531	89 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	USP1	O94782	785 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	FKBP9	O95302	570 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	SLC16A8	O95907	504 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	ALB	P02768	609 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	STATH	P02808	62 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	EIF2S1	P05198	315 aa	Known RBP	11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	GP1BB	P13224	206 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	CHRM3	P20309	590 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	ITGA3	P26006	1051 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	COIL	P38432	576 aa	Predicted RBP	11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	CCNF	P41002	786 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	ARSF	P54793	590 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	TIAL1	Q01085	375 aa	Known RBP eCLIP	11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	DHX34	Q14147	1143 aa	Known RBP	11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	HIF1A	Q16665	826 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	EIF2S3L	Q2VIR3	472 aa	Known RBP	11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	ZC3H12B	Q5HYM0	836 aa	Known RBP	11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	CRB2	Q5IJ48	1285 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	TCTE1	Q5JU00	501 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	ZNF425	Q6IV72	752 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	FBXO42	Q6P3S6	717 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	IGFL3	Q6UXB1	125 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	PIWIL4	Q7Z3Z4	852 aa	Known RBP	11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	PAQR7	Q86WK9	346 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	LRRC56	Q8IYG6	542 aa	Predicted RBP	11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	PRSS58	Q8IYP2	241 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	ARHGEF39	Q8N4T4	335 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	NAT8L	Q8N9F0	302 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	TTC29	Q8NA56	475 aa	Predicted RBP	11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	OR11G2	Q8NGC1	345 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	OR9A1P	Q8NGU1	263 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	CD200R1	Q8TD46	325 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	ZNF480	Q8WV37	535 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	MAGOHB	Q96A72	148 aa	Known RBP	11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	ZUFSP	Q96AP4	578 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	C8orf44	Q96CB5	159 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	TCF12	Q99081	682 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	CUEDC1	Q9NWM3	386 aa	Predicted RBP	11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	C5AR2	Q9P296	337 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	SLC17A6	Q9P2U8	582 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	ZC3H7B	Q9UGR2	993 aa	Known RBP	11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	TAC3	Q9UHF0	121 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	SH2B3	Q9UQQ2	575 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	RUVBL1	Q9Y265	456 aa	Known RBP	11.11	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms