RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 HOPXQ9BPY8 73 aaPredicted RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 KXD1Q9BQD3 176 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PLAGL1Q9UM63 463 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TBC1D3DA0A087WVF3 549 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TBC1D3IA0A087WXS9 549 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TBC1D3EA0A087X179 549 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TBC1D3KA0A087X1G2 549 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TBC1D3FA6NER0 549 aaPredicted RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MGAT4DA6NG13 374 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ZNF487B1APH4 448 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TBC1D3LB9A6J9 549 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 AIREO43918 545 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GNAO1P09471 354 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TBC1D3HP0C7X1 549 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 HLA-FP30511 346 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CYP4F3Q08477 520 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 APOFQ13790 326 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SF1Q15637 639 aaKnown RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SMUG1Q53HV7 270 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TCEAL5Q5H9L2 206 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SNAP47Q5SQN1 464 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TBC1D3GQ6DHY5 549 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TBC1D3CQ6IPX1 549 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SUSD1Q6UWL2 747 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TMPRSS11BQ86T26 416 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 HIPK1Q86Z02 1210 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ADHFE1Q8IWW8 467 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TBC1D3Q8IZP1 549 aaPredicted RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ZBTB2Q8N680 514 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ATL1Q8WXF7 558 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MUS81Q96NY9 551 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TUBA1CQ9BQE3 449 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ALG2Q9H553 416 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CRNNQ9UBG3 495 aaPredicted RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SLC22A14Q9Y267 594 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 B3GNT3Q9Y2A9 372 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PCDHGB5Q9Y5G0 923 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 NCOR1O75376 2440 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MYO10Q9HD67 2058 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 NPIPB15A6NHN6 443 aaPredicted RBP10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 COL6A1P12109 1028 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SH3BP2P78314 561 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 RING1Q06587 406 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 LCP2Q13094 533 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PIGGQ5H8A4 983 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 RABL3Q5HYI8 236 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 C22orf39Q6P5X5 142 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 R3HCC1LQ7Z5L2 792 aaKnown RBP10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PHC2Q8IXK0 858 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 LILRA2Q8N149 483 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 UBE2J2Q8N2K1 259 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TOR1AIP2Q8NFQ8 470 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 C2orf15Q8WU43 125 aaKnown RBP10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 KCNN1Q92952 543 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ACDQ96AP0 544 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TPD52L3Q96J77 140 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ZNF597Q96LX8 424 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 N6AMT1Q9Y5N5 214 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 EFCAB9A8MZ26 197 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 POP4O95707 220 aaKnown RBP10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SNAP29O95721 258 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TIMP1P01033 207 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GTF2E2P29084 291 aaKnown RBP10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 HTR2BP41595 481 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 HLCSP50747 726 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CAMK2GQ13555 558 aaPredicted RBP10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SPDYE7PQ495Y7 208 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TMEM31Q5JXX7 168 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 HDDC2Q7Z4H3 204 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ADAMTSL2Q86TH1 951 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ISCA2Q86U28 154 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 STK40Q8N2I9 435 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 RNF175Q8N4F7 328 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SPERTQ8NA61 448 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 OR14C36Q8NHC7 312 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PTCD2Q8WV60 388 aaKnown RBP10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 IRF7Q92985 503 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PHOX2BQ99453 314 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CTRCQ99895 268 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 FUNDC2Q9BWH2 189 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SYNDIG1Q9H7V2 258 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 RNF11Q9Y3C5 154 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PRR23D1E9PI22 279 aaPredicted RBP10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 KMOO15229 486 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SNNO75324 88 aaPredicted RBP10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PRR23D2P0DMB1 279 aaPredicted RBP10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MAGEA3P43357 314 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PRKAG1P54619 331 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PIGFQ07326 219 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 IL18R1Q13478 541 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 RAB33AQ14088 237 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ZNF267Q14586 743 aaPredicted RBP10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PTGR1Q14914 329 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SYT16Q17RD7 645 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 DGKKQ5KSL6 1271 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 DCP2Q8IU60 420 aaKnown RBP10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 AURKBQ96GD4 344 aaPredicted RBP10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 DCSTAMPQ9H295 470 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 OLAHQ9NV23 265 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 STOML2Q9UJZ1 356 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms