RNA–Protein interactions for RNA: ENST00000486665.5

HDAC6-229, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-229ENST00000486665 CCDC3Q9BQI4 270 aa12.34□□□□□ -0.43
HDAC6-229ENST00000486665 GATA5Q9BWX5 397 aaPredicted RBP12.34□□□□□ -0.43
HDAC6-229ENST00000486665 SGPP1Q9BX95 441 aa12.34□□□□□ -0.43
HDAC6-229ENST00000486665 RAB11FIP5Q9BXF6 653 aa12.34□□□□□ -0.43
HDAC6-229ENST00000486665 PITPNM3Q9BZ71 974 aa12.34□□□□□ -0.43
HDAC6-229ENST00000486665 CNOT10Q9H9A5 744 aaKnown RBP12.34□□□□□ -0.43
HDAC6-229ENST00000486665 KCNK4Q9NYG8 393 aa12.34□□□□□ -0.43
HDAC6-229ENST00000486665 OR6C2Q9NZP2 312 aa12.34□□□□□ -0.43
HDAC6-229ENST00000486665 DKK4Q9UBT3 224 aa12.34□□□□□ -0.43
HDAC6-229ENST00000486665 FTSJ1Q9UET6 329 aa12.34□□□□□ -0.43
HDAC6-229ENST00000486665 MID2Q9UJV3 735 aa12.34□□□□□ -0.43
HDAC6-229ENST00000486665 SLC22A14Q9Y267 594 aa12.34□□□□□ -0.43
HDAC6-229ENST00000486665 COL5A1P20908 1838 aaPredicted RBP12.34□□□□□ -0.43
HDAC6-229ENST00000486665 OR5K3A6NET4 321 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 ZNF839A8K0R7 811 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 BIRC5O15392 142 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 TNFSF14O43557 240 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 CCNT2O60583 730 aaKnown RBP12.33□□□□□ -0.44
HDAC6-229ENST00000486665 TRIM13O60858 407 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 WDR47O94967 919 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 FGF3P11487 239 aaPredicted RBP12.33□□□□□ -0.44
HDAC6-229ENST00000486665 NPPBP16860 134 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 ACP1P24666 158 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 PSMB5P28074 263 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 OAS2P29728 719 aaKnown RBP12.33□□□□□ -0.44
HDAC6-229ENST00000486665 EPHA4P54764 986 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 NAGLUP54802 743 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 TBPL1P62380 186 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 HERVK_113P63132 956 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 PCBP2Q15366 365 aaKnown RBP eCLIP12.33□□□□□ -0.44
HDAC6-229ENST00000486665 AMZ1Q400G9 498 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 LIPMQ5VYY2 423 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 CAPN13Q6MZZ7 669 aaPredicted RBP12.33□□□□□ -0.44
HDAC6-229ENST00000486665 USP53Q70EK8 1073 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 SPRED1Q7Z699 444 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 THOC6Q86W42 341 aaKnown RBP12.33□□□□□ -0.44
HDAC6-229ENST00000486665 SLC22A9Q8IVM8 553 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 OR6Y1Q8NGX8 325 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 L3HYPDHQ96EM0 354 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 NSUN5Q96P11 429 aaKnown RBP12.33□□□□□ -0.44
HDAC6-229ENST00000486665 OR2A14Q96R47 310 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 C1QTNF3Q9BXJ4 246 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 ERVK-6Q9BXR3 956 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 ABCG4Q9H172 646 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 ACTR10Q9NZ32 417 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 SH2B3Q9UQQ2 575 aa12.33□□□□□ -0.44
HDAC6-229ENST00000486665 KNTC1P50748 2209 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 A0A1W2PQM1 296 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 PIPSLA2A3N6 862 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 GSAPA4D1B5 854 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 ISM1B1AKI9 464 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 K7EPI3 171 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 E2F3O00716 465 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 PPP6CO00743 305 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 RPS17P08708 135 aaKnown RBP12.32□□□□□ -0.44
HDAC6-229ENST00000486665 TSPAN8P19075 237 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 EPORP19235 508 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 BGNP21810 368 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 CCR10P46092 362 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 LSSP48449 732 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 CDH13P55290 713 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 ATG14Q6ZNE5 492 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 ZCCHC23Q6ZST2 131 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 OOSP2Q86WS3 158 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 TEX9Q8N6V9 391 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 CCNYL1Q8N7R7 359 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 SNX31Q8N9S9 440 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 OR2A1Q8NGT9 310 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 ZNF483Q8TF39 744 aaPredicted RBP12.32□□□□□ -0.44
HDAC6-229ENST00000486665 NCSTNQ92542 709 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 NAT6Q93015 286 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 CCDC126Q96EE4 140 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 PPM1MQ96MI6 270 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 ACAT2Q9BWD1 397 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 LRRN3Q9H3W5 708 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 GSTO2Q9H4Y5 243 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 CCDC177Q9NQR7 707 aaPredicted RBP12.32□□□□□ -0.44
HDAC6-229ENST00000486665 INTS9Q9NV88 658 aaKnown RBP12.32□□□□□ -0.44
HDAC6-229ENST00000486665 DNAJC11Q9NVH1 559 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 PCTPQ9UKL6 214 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 ATXN7L1Q9ULK2 861 aaPredicted RBP12.32□□□□□ -0.44
HDAC6-229ENST00000486665 PCDHB11Q9Y5F2 797 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 TNPO3Q9Y5L0 923 aaKnown RBP12.32□□□□□ -0.44
HDAC6-229ENST00000486665 CFAP46Q8IYW2 2715 aa12.32□□□□□ -0.44
HDAC6-229ENST00000486665 C2orf74A8MZ97 194 aa12.31□□□□□ -0.44
HDAC6-229ENST00000486665 CAPN5O15484 640 aaPredicted RBP12.31□□□□□ -0.44
HDAC6-229ENST00000486665 PRAMEF4O60810 478 aa12.31□□□□□ -0.44
HDAC6-229ENST00000486665 SUPT7LO94864 414 aa12.31□□□□□ -0.44
HDAC6-229ENST00000486665 ZIC2O95409 532 aaPredicted RBP12.31□□□□□ -0.44
HDAC6-229ENST00000486665 RPLP0P05388 317 aaKnown RBP12.31□□□□□ -0.44
HDAC6-229ENST00000486665 UGT2B7P16662 529 aa12.31□□□□□ -0.44
HDAC6-229ENST00000486665 MPSTP25325 297 aa12.31□□□□□ -0.44
HDAC6-229ENST00000486665 PRDX3P30048 256 aaKnown RBP12.31□□□□□ -0.44
HDAC6-229ENST00000486665 ARRB2P32121 409 aa12.31□□□□□ -0.44
HDAC6-229ENST00000486665 CSF2RBP32927 897 aa12.31□□□□□ -0.44
HDAC6-229ENST00000486665 CAPZBP47756 277 aa12.31□□□□□ -0.44
HDAC6-229ENST00000486665 PPM1FP49593 454 aaPredicted RBP12.31□□□□□ -0.44
HDAC6-229ENST00000486665 ACADVLP49748 655 aa12.31□□□□□ -0.44
HDAC6-229ENST00000486665 GFERP55789 205 aa12.31□□□□□ -0.44
HDAC6-229ENST00000486665 SQSTM1Q13501 440 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms