RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 NCS1P62166 190 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 NFKB2Q00653 900 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 ABHD18Q0P651 414 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 SEZ6Q53EL9 994 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 NPNTQ6UXI9 565 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 PIGZQ86VD9 579 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 PSD4Q8NDX1 1056 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 VANGL1Q8TAA9 524 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-209ENST00000472056 COL3A1P02461 1466 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-209ENST00000472056 ENDOD1O94919 500 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 PGAM2P15259 253 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 ZNF182P17025 639 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-209ENST00000472056 SLC18A2Q05940 514 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 CDK10Q15131 360 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 TIFABQ6ZNK6 161 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 SCN2AQ99250 2005 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 SCN11AQ9UI33 1791 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 MATN1P21941 496 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 ALDH3B2P48448 385 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 TBRG1Q3YBR2 411 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 SLC36A4Q6YBV0 504 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 LIX1Q8N485 282 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 COX18Q8N8Q8 333 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 TSSK3Q96PN8 268 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 MCMBPQ9BTE3 642 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 TAPBPLQ9BX59 468 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 ZNF334Q9HCZ1 680 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-209ENST00000472056 C19orf12Q9NSK7 152 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 FXYD6-FXYD2A0A087WZ82 144 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 DGKGP49619 791 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 LRIF1Q5T3J3 769 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 ZNF280BQ86YH2 543 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 ZNF641Q96N77 438 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-209ENST00000472056 FXYD6Q9H0Q3 95 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 IL17RBQ9NRM6 502 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 TP53BP1Q12888 1972 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-209ENST00000472056 ARPC2O15144 300 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 PAGE1O75459 146 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 GABBR2O75899 941 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 AKR1A1P14550 325 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 ADRA1BP35368 520 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 SCGB1C1Q8TD33 95 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 C2orf15Q8WU43 125 aaKnown RBP13.01□□□□□ -0.33
COL6A3-209ENST00000472056 ING5Q8WYH8 240 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 PLD4Q96BZ4 506 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 DUSP26Q9BV47 211 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 VLDLRP98155 873 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 GPR33Q49SQ1 333 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 PIGGQ5H8A4 983 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 TMEM214Q6NUQ4 689 aaKnown RBP13.01□□□□□ -0.33
COL6A3-209ENST00000472056 DGLUCYQ7Z3D6 616 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 PLD6Q8N2A8 252 aaKnown RBP13.01□□□□□ -0.33
COL6A3-209ENST00000472056 TMEM199Q8N511 208 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 SHKBP1Q8TBC3 707 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 KCTD13Q8WZ19 329 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 PADI2Q9Y2J8 665 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 MST1RQ04912 1400 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 AGAP5A6NIR3 686 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 TLR4O00206 839 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 GRIN3BO60391 1043 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 KLRC2P26717 231 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 CDH8P55286 799 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 ZNF267Q14586 743 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-209ENST00000472056 ANKRD13BQ86YJ7 626 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 OR2AJ1Q8NGZ0 328 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 SLC35G5Q96KT7 338 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 ZNF599Q96NL3 588 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 EFCAB11Q9BUY7 163 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 CCDC106Q9BWC9 280 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 CHIAQ9BZP6 476 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 MTG2Q9H4K7 406 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 ARL5AQ9Y689 179 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 BTBD19C9JJ37 291 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 TREHO43280 583 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 THEGLP0DJG4 465 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 ITPKBP27987 946 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 CCR8P51685 355 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 SEMA5AQ13591 1074 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 HNRNPDQ14103 355 aaKnown RBP13□□□□□ -0.33
COL6A3-209ENST00000472056 PIWIL1Q96J94 861 aaKnown RBP13□□□□□ -0.33
COL6A3-209ENST00000472056 PHF24Q9UPV7 400 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 MGAT4BQ9UQ53 548 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 A0A1W2PRQ8 180 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 HTR3EA5X5Y0 456 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 ZNF487B1APH4 448 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 SULT1C2O00338 296 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 NDUFS1P28331 727 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 MXD1Q05195 221 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 IL10RBQ08334 325 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 GPR153Q6NV75 609 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 WDR55Q9H6Y2 383 aaPredicted RBP13□□□□□ -0.33
COL6A3-209ENST00000472056 B3GNT3Q9Y2A9 372 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 TNFRSF10BO14763 440 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 COQ9O75208 318 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 IL12BP29460 328 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 UQCRC1P31930 480 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 BMP8BP34820 402 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 PRKCDQ05655 676 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 ARL6IP1Q15041 203 aa13□□□□□ -0.33
COL6A3-209ENST00000472056 ANKDD1AQ495B1 522 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms