RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 HSPB3Q12988 150 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 MAP7Q14244 749 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 CES5AQ6NT32 575 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 HMBOX1Q6NT76 420 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 TMEM132CQ8N3T6 1108 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 SLCO4A1Q96BD0 722 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 BDH2Q9BUT1 245 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 LRRC3Q9BY71 257 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 PRDM8Q9NQV8 689 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 SMOXQ9NWM0 555 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 TMEM181Q9P2C4 612 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 PLEKHM1Q9Y4G2 1056 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 TRPM7Q96QT4 1865 aa13.33□□□□□ -0.27
CCDC88A-211ENST00000471947 H3BQ06 376 aaPredicted RBP13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 SLC9A3R1O14745 358 aaPredicted RBP13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 C8orf89P0DMQ9 161 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 ENGP17813 658 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 EGFLAMQ63HQ2 1017 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 GATA6Q92908 595 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 NEIL2Q969S2 332 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 ROPN1LQ96C74 230 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 RMND5AQ9H871 391 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 RC3H2Q9HBD1 1191 aaKnown RBP13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 FAF1Q9UNN5 650 aaPredicted RBP13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 TESMINQ9Y4I5 508 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 MITFO75030 526 aaPredicted RBP13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 EPN2O95208 641 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 CNPY1Q3B7I2 92 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 ZNF761Q86XN6 746 aaPredicted RBP13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 ASPSCR1Q9BZE9 553 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 TMEM245Q9H330 911 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 NDRG2Q9UN36 371 aaKnown RBP13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 ASPDHA6ND91 283 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 LINC01565O15544 149 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 GREM1O60565 184 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 CDH1P12830 882 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 EMX2Q04743 252 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 GANABQ14697 944 aaKnown RBP13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 FOXB2Q5VYV0 432 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 NOXRED1Q6NXP6 359 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 BRAT1Q6PJG6 821 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 UTS2BQ765I0 119 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 CELF5Q8N6W0 485 aaKnown RBP13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 VANGL1Q8TAA9 524 aaPredicted RBP13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 MIPOL1Q8TD10 442 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 SNRNP27Q8WVK2 155 aaKnown RBP13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 PKP4Q99569 1192 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 PBX4Q9BYU1 374 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 NKX2-4Q9H2Z4 354 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 CLDND1Q9NY35 253 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 FBXO10Q9UK96 956 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 PTBP2Q9UKA9 531 aaKnown RBP13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 TMPRSS11EQ9UL52 423 aa13.33□□□□□ -0.28
CCDC88A-211ENST00000471947 CHRM5P08912 532 aaPredicted RBP13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 IL12RB1P42701 662 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 RPS9P46781 194 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 MYBPC1Q00872 1141 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 OGFRL1Q5TC84 451 aaPredicted RBP13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 TBPL2Q6SJ96 375 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 ZNF513Q8N8E2 541 aaPredicted RBP13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 OR4A15Q8NGL6 344 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 FRS2Q8WU20 508 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 RAB8BQ92930 207 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 PEX13Q92968 403 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 NUSAP1Q9BXS6 441 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 VPS29Q9UBQ0 182 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 CCDC85CA6NKD9 419 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 ZSCAN9O15535 394 aaPredicted RBP13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 CLDN2P57739 230 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 TBPL1P62380 186 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 HIST2H2ACQ16777 129 aaPredicted RBP13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 PYCR3Q53H96 274 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 CPTPQ5TA50 214 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 HIST2H2AA3Q6FI13 130 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 PRMT9Q6P2P2 845 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 NETO1Q8TDF5 533 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 ARRDC3Q96B67 414 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 ARMC5Q96C12 935 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 C12orf66Q96MD2 445 aa13.32□□□□□ -0.28
CCDC88A-211ENST00000471947 BBIP1A8MTZ0 92 aa13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 CLIC1O00299 241 aa13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 ACADVLP49748 655 aa13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 RCAN2Q14206 197 aa13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 SHHQ15465 462 aa13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 SLC14A2Q15849 920 aa13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 LILRA6Q6PI73 481 aa13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 ZFAND4Q86XD8 727 aa13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 CRIPAKQ8N1N5 446 aa13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 HUS1BQ8NHY5 278 aa13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 TADA1Q96BN2 335 aa13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 MUS81Q96NY9 551 aa13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 NR1H4Q96RI1 486 aaPredicted RBP13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 C9orf16Q9BUW7 83 aa13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 POPDC3Q9HBV1 291 aa13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 THG1LQ9NWX6 298 aaKnown RBP13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 SCN2AQ99250 2005 aa13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 SCN3AQ9NY46 2000 aa13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 CKAP5Q14008 2032 aa13.31□□□□□ -0.28
CCDC88A-211ENST00000471947 ISM1B1AKI9 464 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms