RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SDHBP21912 280 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 ITPKAP23677 461 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 RRM2P31350 389 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 CCINQ13939 588 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 DUSP6Q16828 381 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 CYP51A1Q16850 503 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 FLYWCH1Q4VC44 716 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 FAM20CQ8IXL6 584 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 GDPD1Q8N9F7 314 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 PROKR2Q8NFJ6 384 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 OR7A2PQ8NGA2 310 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 OR2T11Q8NH01 316 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 EPYCQ99645 322 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 RSPO3Q9BXY4 272 aaPredicted RBP5.21□□□□□ -1.58
SYNE1-220ENST00000471834 TRIM45Q9H8W5 580 aaPredicted RBP5.21□□□□□ -1.58
SYNE1-220ENST00000471834 RNF112Q9ULX5 631 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 LYVE1Q9Y5Y7 322 aa5.21□□□□□ -1.58
SYNE1-220ENST00000471834 FAM149AA5PLN7 773 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 YJEFN3A6XGL0 299 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 LOC110117498-PIK3R3F6TDL0 507 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 PROM1O43490 865 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 TSC22D2O75157 780 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 VPS26AO75436 327 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 NFATC1O95644 943 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 CDK1P06493 297 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 GGT2P36268 569 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 ZNF628Q5EBL2 1059 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 FBXO47Q5MNV8 452 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 SYVN1Q86TM6 617 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 C10orf111Q8N326 155 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 OR2T12Q8NG77 320 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 PIK3R3Q92569 461 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 SH3GL1Q99961 368 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 CDHR5Q9HBB8 845 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 DNAJC11Q9NVH1 559 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 NCKAP1Q9Y2A7 1128 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 PIP5K1BO14986 540 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 CD160O95971 181 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 IFI6P09912 130 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 PRPS2P11908 318 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 LILRA4P59901 499 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 TWF1Q12792 350 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 TRAF2Q12933 501 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 SSX1Q16384 188 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 VMACQ2NL98 169 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 ARSJQ5FYB0 599 aaPredicted RBP5.2□□□□□ -1.58
SYNE1-220ENST00000471834 C12orf73Q69YU5 71 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 TAPT1Q6NXT6 567 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 SPPL2CQ8IUH8 684 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 TMEM248Q9NWD8 314 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 SLAMF8Q9P0V8 285 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 TESQ9UGI8 421 aaKnown RBP5.2□□□□□ -1.58
SYNE1-220ENST00000471834 PDCD11Q14690 1871 aaKnown RBP5.2□□□□□ -1.58
SYNE1-220ENST00000471834 CHD5Q8TDI0 1954 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 C5orf58C9J3I9 102 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 KCNK1O00180 336 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 PLK4O00444 970 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 HCN1O60741 890 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 SLC43A1O75387 559 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 NDUFS3O75489 264 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 CLIC3O95833 236 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 CD1AP06126 327 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 CFL1P23528 166 aaKnown RBP5.2□□□□□ -1.58
SYNE1-220ENST00000471834 PCYT1AP49585 367 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 BDH1Q02338 343 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 HACD4Q5VWC8 232 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 MACC1Q6ZN28 852 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 ARL10Q8N8L6 244 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 GLMNQ92990 594 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 CXorf40BQ96DE9 158 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 CRELD1Q96HD1 420 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 FCRL2Q96LA5 508 aaPredicted RBP5.2□□□□□ -1.58
SYNE1-220ENST00000471834 HHATLQ9HCP6 504 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 PNMA8CA0A1B0GUJ8 204 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 PPEF2O14830 753 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 ESR1P03372 595 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 SV2CQ496J9 727 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 LDLRAP1Q5SW96 308 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 FBXL6Q8N531 539 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 C12orf29Q8N999 325 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 FBXO15Q8NCQ5 510 aaPredicted RBP5.2□□□□□ -1.58
SYNE1-220ENST00000471834 OR8J2Q8NGG1 315 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 PABPC5Q96DU9 382 aaKnown RBP5.2□□□□□ -1.58
SYNE1-220ENST00000471834 AHCYL2Q96HN2 611 aaKnown RBP5.2□□□□□ -1.58
SYNE1-220ENST00000471834 ITPAQ9BY32 194 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 CEP44Q9C0F1 390 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 PIH1D1Q9NWS0 290 aaKnown RBP5.2□□□□□ -1.58
SYNE1-220ENST00000471834 NUDT4Q9NZJ9 180 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 IL17CQ9P0M4 197 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 MELTFP08582 738 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 ARSBP15848 533 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 SYN1P17600 705 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 ST13P50502 369 aaKnown RBP5.2□□□□□ -1.58
SYNE1-220ENST00000471834 CLCN7P51798 805 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 RBBP4Q09028 425 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 FAPQ12884 760 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 EFR3AQ14156 821 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 CDKN3Q16667 212 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 VPS26BQ4G0F5 336 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 ZDHHC13Q8IUH4 622 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms