RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 CATSPER1Q8NEC5 780 aa12.68□□□□□ -0.38
CPSF4-210ENST00000469897 STT3BQ8TCJ2 826 aa12.68□□□□□ -0.38
CPSF4-210ENST00000469897 MIEF2Q96C03 454 aa12.68□□□□□ -0.38
CPSF4-210ENST00000469897 TCF12Q99081 682 aa12.68□□□□□ -0.38
CPSF4-210ENST00000469897 TRIM56Q9BRZ2 755 aaKnown RBP12.68□□□□□ -0.38
CPSF4-210ENST00000469897 CRB3Q9BUF7 120 aa12.68□□□□□ -0.38
CPSF4-210ENST00000469897 YIPF2Q9BWQ6 316 aa12.68□□□□□ -0.38
CPSF4-210ENST00000469897 LHPPQ9H008 270 aa12.68□□□□□ -0.38
CPSF4-210ENST00000469897 MRM3Q9HC36 420 aaKnown RBP12.68□□□□□ -0.38
CPSF4-210ENST00000469897 SEMA3GQ9NS98 782 aa12.68□□□□□ -0.38
CPSF4-210ENST00000469897 NXT1Q9UKK6 140 aaKnown RBP12.68□□□□□ -0.38
CPSF4-210ENST00000469897 SOX13Q9UN79 622 aa12.68□□□□□ -0.38
CPSF4-210ENST00000469897 PCDHGA10Q9Y5H3 936 aa12.68□□□□□ -0.38
CPSF4-210ENST00000469897 TNRC6AQ8NDV7 1962 aaKnown RBP12.67□□□□□ -0.38
CPSF4-210ENST00000469897 OR2A25A4D2G3 310 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 WIPF3A6NGB9 483 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 H0YGG7 62 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 H3BMM5 538 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 KLHL18O94889 574 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 ESR1P03372 595 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 F7P08709 466 aaPredicted RBP12.67□□□□□ -0.38
CPSF4-210ENST00000469897 ZGLP1P0C6A0 271 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 PKMP14618 531 aaKnown RBP12.67□□□□□ -0.38
CPSF4-210ENST00000469897 TPSB2P20231 275 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 RPA3P35244 121 aaPredicted RBP12.67□□□□□ -0.38
CPSF4-210ENST00000469897 ARF3P61204 181 aaPredicted RBP12.67□□□□□ -0.38
CPSF4-210ENST00000469897 GPS1Q13098 491 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 ELOAQ14241 798 aaKnown RBP12.67□□□□□ -0.38
CPSF4-210ENST00000469897 GBX1Q14549 363 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 TPSAB1Q15661 275 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 TYSND1Q2T9J0 566 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.67□□□□□ -0.38
CPSF4-210ENST00000469897 NEPROQ6NW34 567 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 PRMT9Q6P2P2 845 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 CASC4Q6P4E1 433 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 IGFL2Q6UWQ7 119 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 CENPUQ71F23 418 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 RNF44Q7L0R7 432 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 KCNMB4Q86W47 210 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 SMPDL3AQ92484 453 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 C8orf44Q96CB5 159 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 PKP4Q99569 1192 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 BARD1Q99728 777 aaKnown RBP12.67□□□□□ -0.38
CPSF4-210ENST00000469897 ZFYVE21Q9BQ24 234 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 WDR77Q9BQA1 342 aaPredicted RBP12.67□□□□□ -0.38
CPSF4-210ENST00000469897 SYNPO2LQ9H987 977 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 ZNF160Q9HCG1 818 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 AGPAT4Q9NRZ5 378 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 HOMER3Q9NSC5 361 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 SPATA7Q9P0W8 599 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 ZNF282Q9UDV7 671 aaPredicted RBP12.67□□□□□ -0.38
CPSF4-210ENST00000469897 C3orf18Q9UK00 162 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 FAM169AQ9Y6X4 670 aa12.67□□□□□ -0.38
CPSF4-210ENST00000469897 NBASA2RRP1 2371 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 PTPN13Q12923 2485 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 ARHGEF33A8MVX0 844 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 E5RI56 91 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 FFAR3O14843 346 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 GPR42O15529 346 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 PSIP1O75475 530 aaKnown RBP12.66□□□□□ -0.38
CPSF4-210ENST00000469897 CLDN1O95832 211 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 LDLRP01130 860 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 CCDC175P0C221 793 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 ERVK-10P10266 1014 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 CARSP49589 748 aaKnown RBP12.66□□□□□ -0.38
CPSF4-210ENST00000469897 ADARP55265 1226 aaKnown RBP12.66□□□□□ -0.38
CPSF4-210ENST00000469897 SARNPP82979 210 aaKnown RBP12.66□□□□□ -0.38
CPSF4-210ENST00000469897 CTBP1Q13363 440 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 KCNJ11Q14654 390 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 RNF187Q5TA31 235 aaPredicted RBP12.66□□□□□ -0.38
CPSF4-210ENST00000469897 ANKRD22Q5VYY1 191 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 ATG9BQ674R7 924 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 KIAA0930Q6ICG6 404 aaPredicted RBP12.66□□□□□ -0.38
CPSF4-210ENST00000469897 ZNF662Q6ZS27 426 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 CAND1Q86VP6 1230 aaKnown RBP12.66□□□□□ -0.38
CPSF4-210ENST00000469897 LURAP1LQ8IV03 231 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 PPFIBP2Q8ND30 876 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 PPP4R1Q8TF05 950 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 VPS50Q96JG6 964 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 CABS1Q96KC9 395 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 CNDP1Q96KN2 507 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 C10orf90Q96M02 699 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 SLC30A3Q99726 388 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 PLCD4Q9BRC7 762 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 MRPS30Q9NP92 439 aaKnown RBP12.66□□□□□ -0.38
CPSF4-210ENST00000469897 ABCF3Q9NUQ8 709 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 NOVA2Q9UNW9 492 aaKnown RBP12.66□□□□□ -0.38
CPSF4-210ENST00000469897 SLC5A6Q9Y289 635 aa12.66□□□□□ -0.38
CPSF4-210ENST00000469897 UTP20O75691 2785 aaKnown RBP12.66□□□□□ -0.38
CPSF4-210ENST00000469897 IGKV1-8A0A0C4DH67 115 aa12.65□□□□□ -0.38
CPSF4-210ENST00000469897 MAGEB16A2A368 324 aa12.65□□□□□ -0.38
CPSF4-210ENST00000469897 CTAGE9A4FU28 777 aa12.65□□□□□ -0.38
CPSF4-210ENST00000469897 SDR42E2A6NKP2 422 aa12.65□□□□□ -0.38
CPSF4-210ENST00000469897 GOLGA8MH3BSY2 632 aa12.65□□□□□ -0.38
CPSF4-210ENST00000469897 USP1O94782 785 aa12.65□□□□□ -0.38
CPSF4-210ENST00000469897 KRT14P02533 472 aa12.65□□□□□ -0.38
CPSF4-210ENST00000469897 PAMP19021 973 aa12.65□□□□□ -0.38
CPSF4-210ENST00000469897 OGNP20774 298 aaKnown RBP12.65□□□□□ -0.38
CPSF4-210ENST00000469897 FBLP22087 321 aaKnown RBP12.65□□□□□ -0.38
CPSF4-210ENST00000469897 ATP5DP30049 168 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 113.3 ms