RNA–Protein interactions for RNA: ENST00000469207.5

HDAC3-204, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-204ENST00000469207 HES6Q96HZ4 224 aa11.7□□□□□ -0.54
HDAC3-204ENST00000469207 MAGEB10Q96LZ2 347 aaPredicted RBP11.7□□□□□ -0.54
HDAC3-204ENST00000469207 C10orf90Q96M02 699 aa11.7□□□□□ -0.54
HDAC3-204ENST00000469207 YIPF2Q9BWQ6 316 aa11.7□□□□□ -0.54
HDAC3-204ENST00000469207 UNKQ9C0B0 810 aaKnown RBP11.7□□□□□ -0.54
HDAC3-204ENST00000469207 EPS8L2Q9H6S3 715 aa11.7□□□□□ -0.54
HDAC3-204ENST00000469207 SEMA3GQ9NS98 782 aa11.7□□□□□ -0.54
HDAC3-204ENST00000469207 INTS7Q9NVH2 962 aaKnown RBP11.7□□□□□ -0.54
HDAC3-204ENST00000469207 C3orf18Q9UK00 162 aa11.7□□□□□ -0.54
HDAC3-204ENST00000469207 RIMKLBQ9ULI2 386 aa11.7□□□□□ -0.54
HDAC3-204ENST00000469207 ZNF148Q9UQR1 794 aa11.7□□□□□ -0.54
HDAC3-204ENST00000469207 CAPN6Q9Y6Q1 641 aa11.7□□□□□ -0.54
HDAC3-204ENST00000469207 ERI2A8K979 691 aaKnown RBP11.69□□□□□ -0.54
HDAC3-204ENST00000469207 H0YGG7 62 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 JRKO75564 520 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 IPO7O95373 1038 aaKnown RBP11.69□□□□□ -0.54
HDAC3-204ENST00000469207 GAS8O95995 478 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 HPP00738 406 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 RPN2P04844 631 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 APRTP07741 180 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 GRNP28799 593 aaKnown RBP11.69□□□□□ -0.54
HDAC3-204ENST00000469207 FMO4P31512 558 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 RPL22P35268 128 aaKnown RBP11.69□□□□□ -0.54
HDAC3-204ENST00000469207 FDFT1P37268 417 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 ST13P50502 369 aaKnown RBP11.69□□□□□ -0.54
HDAC3-204ENST00000469207 EFNA3P52797 238 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 TERF1P54274 439 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 EIF3BP55884 814 aaKnown RBP11.69□□□□□ -0.54
HDAC3-204ENST00000469207 ARF3P61204 181 aaPredicted RBP11.69□□□□□ -0.54
HDAC3-204ENST00000469207 OCA2Q04671 838 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 EEF1A2Q05639 463 aaKnown RBP11.69□□□□□ -0.54
HDAC3-204ENST00000469207 SYT16Q17RD7 645 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 CTSL3PQ5NE16 218 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 YOD1Q5VVQ6 348 aaPredicted RBP11.69□□□□□ -0.54
HDAC3-204ENST00000469207 TMEM139Q8IV31 216 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 BRIX1Q8TDN6 353 aaKnown RBP11.69□□□□□ -0.54
HDAC3-204ENST00000469207 MARVELD3Q96A59 401 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 LMF1Q96S06 567 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 SLX1AQ9BQ83 275 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 DPH7Q9BTV6 452 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 TSSK1BQ9BXA7 367 aa11.69□□□□□ -0.54
HDAC3-204ENST00000469207 MRM3Q9HC36 420 aaKnown RBP11.69□□□□□ -0.54
HDAC3-204ENST00000469207 ZNF282Q9UDV7 671 aaPredicted RBP11.69□□□□□ -0.54
HDAC3-204ENST00000469207 MIF4GDA9UHW6 222 aaKnown RBP11.68□□□□□ -0.54
HDAC3-204ENST00000469207 NIPSNAP2O75323 286 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 NDUFS3O75489 264 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 ZNF189O75820 626 aaPredicted RBP11.68□□□□□ -0.54
HDAC3-204ENST00000469207 STATHP02808 62 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 STSP08842 583 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 PRR35P0CG20 571 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 COX6A1P12074 109 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 ACPPP15309 386 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 POU3F2P20265 443 aaPredicted RBP11.68□□□□□ -0.54
HDAC3-204ENST00000469207 PPARGP37231 505 aaPredicted RBP11.68□□□□□ -0.54
HDAC3-204ENST00000469207 EMP2P54851 167 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 ARG2P78540 354 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 TSTA3Q13630 321 aaPredicted RBP11.68□□□□□ -0.54
HDAC3-204ENST00000469207 HKDC1Q2TB90 917 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 PCID2Q5JVF3 399 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 ZNF324BQ6AW86 544 aaPredicted RBP11.68□□□□□ -0.54
HDAC3-204ENST00000469207 TTC23LQ6PF05 361 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 FAM180AQ6UWF9 173 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 NLRP9Q7RTR0 991 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 OTOAQ7RTW8 1153 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 SYCE1Q8N0S2 351 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 PPHLN1Q8NEY8 458 aaKnown RBP11.68□□□□□ -0.54
HDAC3-204ENST00000469207 MFSD3Q96ES6 412 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 BIRC8Q96P09 236 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 RBSNQ9H1K0 784 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 ENAMQ9NRM1 1142 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 TREX1Q9NSU2 369 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 ABCF3Q9NUQ8 709 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 OLAHQ9NV23 265 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 IL1RAPL1Q9NZN1 696 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 NXT1Q9UKK6 140 aaKnown RBP11.68□□□□□ -0.54
HDAC3-204ENST00000469207 MYO7BQ6PIF6 2116 aa11.68□□□□□ -0.54
HDAC3-204ENST00000469207 NSG1A0A0A6YYJ2 146 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 IGKV1-8A0A0C4DH67 115 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 OR2A25A4D2G3 310 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 OR2W5A6NFC9 320 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 IDSB3KWA1 339 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 PRSS44E7EML9 344 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 F8W8V4 182 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 MAP2K7O14733 419 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 FBLP22087 321 aaKnown RBP11.67□□□□□ -0.54
HDAC3-204ENST00000469207 ARNTP27540 789 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 CARSP49589 748 aaKnown RBP11.67□□□□□ -0.54
HDAC3-204ENST00000469207 TTPAP49638 278 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 TDGF1P3P51864 188 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 KIF5AQ12840 1032 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 TMED2Q15363 201 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 PRTGQ2VWP7 1150 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.67□□□□□ -0.54
HDAC3-204ENST00000469207 LRRC8BQ6P9F7 803 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 RNF44Q7L0R7 432 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 NDUFAF7Q7L592 441 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 SLC13A5Q86YT5 568 aaPredicted RBP11.67□□□□□ -0.54
HDAC3-204ENST00000469207 PLD3Q8IV08 490 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 KBTBD2Q8IY47 623 aa11.67□□□□□ -0.54
HDAC3-204ENST00000469207 PPFIBP2Q8ND30 876 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms