RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 PNPT1Q8TCS8 783 aaKnown RBP14.62□□□□□ -0.07
LDLR-202ENST00000455727 BRF2Q9HAW0 419 aa14.62□□□□□ -0.07
LDLR-202ENST00000455727 HPS4Q9NQG7 708 aa14.62□□□□□ -0.07
LDLR-202ENST00000455727 USE1Q9NZ43 259 aa14.62□□□□□ -0.07
LDLR-202ENST00000455727 HCFC2Q9Y5Z7 792 aa14.62□□□□□ -0.07
LDLR-202ENST00000455727 PDE4DIPQ5VU43 2346 aa14.62□□□□□ -0.07
LDLR-202ENST00000455727 PRRC2BQ5JSZ5 2229 aaKnown RBP14.62□□□□□ -0.07
LDLR-202ENST00000455727 TMEM202A6NGA9 273 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 ZNF701M0R085 212 aaPredicted RBP14.61□□□□□ -0.07
LDLR-202ENST00000455727 RFXANKO14593 260 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 ZNF197O14709 1029 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 CD22P20273 847 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 RPL10P27635 214 aaKnown RBP14.61□□□□□ -0.07
LDLR-202ENST00000455727 CTNNB1P35222 781 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 NTHL1P78549 312 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 UBE3AQ05086 875 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 TMEM115Q12893 351 aaPredicted RBP14.61□□□□□ -0.07
LDLR-202ENST00000455727 DHCR24Q15392 516 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 XKR6Q5GH73 641 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 GRHL2Q6ISB3 625 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 AGTRAPQ6RW13 159 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 SERPINA11Q86U17 422 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 NLRP8Q86W28 1048 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 ADHFE1Q8IWW8 467 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 OFCC1Q8IZS5 231 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 CLEC4FQ8N1N0 589 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 C11orf24Q96F05 449 aaPredicted RBP14.61□□□□□ -0.07
LDLR-202ENST00000455727 EGLN2Q96KS0 407 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 OSBPL10Q9BXB5 764 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 STOX2Q9P2F5 926 aaPredicted RBP14.61□□□□□ -0.07
LDLR-202ENST00000455727 RUVBL1Q9Y265 456 aaKnown RBP14.61□□□□□ -0.07
LDLR-202ENST00000455727 MKI67P46013 3256 aaKnown RBP14.61□□□□□ -0.07
LDLR-202ENST00000455727 TRMUO75648 421 aaKnown RBP14.61□□□□□ -0.07
LDLR-202ENST00000455727 ELFN1P0C7U0 828 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 TTKP33981 857 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 CDKN2CP42773 168 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 DGKGP49619 791 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 CTSCP53634 463 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 DOC2AQ14183 400 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 E2F2Q14209 437 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 CBX2Q14781 532 aaPredicted RBP14.61□□□□□ -0.07
LDLR-202ENST00000455727 DUOXA1Q1HG43 343 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 ZNF648Q5T619 568 aaPredicted RBP14.61□□□□□ -0.07
LDLR-202ENST00000455727 LPCAT2Q7L5N7 544 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 GPR141Q7Z602 305 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 ERI1Q8IV48 349 aaKnown RBP14.61□□□□□ -0.07
LDLR-202ENST00000455727 SLC22A15Q8IZD6 547 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 EID3Q8N140 333 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 PGBD3Q8N328 593 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 PJA1Q8NG27 643 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 OR8J2Q8NGG1 315 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 OR56A3Q8NH54 315 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 NETO1Q8TDF5 533 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 STARD8Q92502 1023 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 NELL1Q92832 810 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 AP2M1Q96CW1 435 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 THG1LQ9NWX6 298 aaKnown RBP14.61□□□□□ -0.07
LDLR-202ENST00000455727 SLC27A6Q9Y2P4 619 aa14.61□□□□□ -0.07
LDLR-202ENST00000455727 LAMA2P24043 3122 aaKnown RBP14.61□□□□□ -0.07
LDLR-202ENST00000455727 KRT87PA6NCN2 255 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 EVPLLA8MZ36 301 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 PPP2R2BQ00005 443 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 TTC23Q5W5X9 447 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 GRASPQ7Z6J2 395 aaPredicted RBP14.6□□□□□ -0.07
LDLR-202ENST00000455727 ANKRD46Q86W74 232 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 SYT12Q8IV01 421 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 C10orf111Q8N326 155 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 ZCCHC7Q8N3Z6 543 aaKnown RBP14.6□□□□□ -0.07
LDLR-202ENST00000455727 FBXO15Q8NCQ5 510 aaPredicted RBP14.6□□□□□ -0.07
LDLR-202ENST00000455727 NCLNQ969V3 563 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 PYURFQ96I23 114 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 HIC2Q96JB3 615 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 RBM4BQ9BQ04 359 aaKnown RBP14.6□□□□□ -0.07
LDLR-202ENST00000455727 RBM4Q9BWF3 364 aaKnown RBP14.6□□□□□ -0.07
LDLR-202ENST00000455727 MTG2Q9H4K7 406 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 GPRC5BQ9NZH0 403 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 MAPRE3Q9UPY8 281 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 NUP210Q8TEM1 1887 aaPredicted RBP14.6□□□□□ -0.07
LDLR-202ENST00000455727 E7EQ34 232 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 NPC1O15118 1278 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 HOXC11O43248 304 aaPredicted RBP14.6□□□□□ -0.07
LDLR-202ENST00000455727 SCN2BO60939 215 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 CCNDBP1O95273 360 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 GSNP06396 782 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 POU2F2P09086 479 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 EPCAMP16422 314 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 HLCSP50747 726 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 PPIGQ13427 754 aaKnown RBP eCLIP14.6□□□□□ -0.073e-7■■□□□ 11.4
LDLR-202ENST00000455727 NAE1Q13564 534 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 ACOX1Q15067 660 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 OR4F3Q6IEY1 312 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 PARS2Q7L3T8 475 aaKnown RBP14.6□□□□□ -0.07
LDLR-202ENST00000455727 CELF5Q8N6W0 485 aaKnown RBP14.6□□□□□ -0.07
LDLR-202ENST00000455727 TBC1D20Q96BZ9 403 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 COQ10AQ96MF6 247 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 FOPNLQ96NB1 174 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 MUS81Q96NY9 551 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 NPLQ9BXD5 320 aaPredicted RBP14.6□□□□□ -0.07
LDLR-202ENST00000455727 REXO4Q9GZR2 422 aaKnown RBP14.6□□□□□ -0.07
LDLR-202ENST00000455727 SOX17Q9H6I2 414 aaPredicted RBP14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms