RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 LAIR1Q6GTX8 287 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 ADNP2Q6IQ32 1131 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 TMEM26Q6ZUK4 368 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 TRIM48Q8IWZ4 208 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 TRIM42Q8IWZ5 723 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 TCAIMQ8N3R3 496 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 MINDY1Q8N5J2 469 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 SNX31Q8N9S9 440 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 OR4F6Q8NGB9 312 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 OR2A1Q8NGT9 310 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 MAGEC3Q8TD91 643 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 LCN9Q8WX39 176 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 C7orf26Q96N11 449 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 KCNK13Q9HB14 408 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 PARD6AQ9NPB6 346 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 POT1Q9NUX5 634 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 DNAJC11Q9NVH1 559 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 CUEDC1Q9NWM3 386 aaPredicted RBP10.6□□□□□ -0.71
SCN9A-205ENST00000454569 SPATA7Q9P0W8 599 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 TAC3Q9UHF0 121 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 PCDHGA5Q9Y5G8 931 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 TNPO3Q9Y5L0 923 aaKnown RBP10.6□□□□□ -0.71
SCN9A-205ENST00000454569 PTGDR2Q9Y5Y4 395 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 PCNX2A6NKB5 2137 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 ZNF292O60281 2723 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 IGKV1-8A0A0C4DH67 115 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 OR6C74A6NCV1 312 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 OR5K4A6NMS3 321 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 CDX4O14627 284 aaPredicted RBP10.6□□□□□ -0.71
SCN9A-205ENST00000454569 KHNYNO15037 678 aaKnown RBP10.6□□□□□ -0.71
SCN9A-205ENST00000454569 SIGLEC6O43699 453 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 H2AFYO75367 372 aaKnown RBP10.6□□□□□ -0.71
SCN9A-205ENST00000454569 CHRM5P08912 532 aaPredicted RBP10.6□□□□□ -0.71
SCN9A-205ENST00000454569 TYRP1P17643 537 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 POLR2CP19387 275 aaPredicted RBP10.6□□□□□ -0.71
SCN9A-205ENST00000454569 TGM1P22735 817 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 FASLGP48023 281 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 LSSP48449 732 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 HTR6P50406 440 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 ASPHQ12797 758 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 CDC16Q13042 620 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 LCP2Q13094 533 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 C14orf28Q4W4Y0 310 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 SH2D4BQ5SQS7 431 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 VWA5B1Q5TIE3 1220 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 SCIMPQ6UWF3 145 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 ZNF771Q7L3S4 317 aaPredicted RBP10.6□□□□□ -0.71
SCN9A-205ENST00000454569 LRRC70Q7Z2Q7 622 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 SLC9B2Q86UD5 537 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 AMIGO1Q86WK6 493 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 RNF175Q8N4F7 328 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 EID2Q8N6I1 236 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 ZNF740Q8NDX6 193 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 ATL1Q8WXF7 558 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 RSC1A1Q92681 617 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 ATOH1Q92858 354 aaPredicted RBP10.6□□□□□ -0.71
SCN9A-205ENST00000454569 CCT8L2Q96SF2 557 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 SCN2AQ99250 2005 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 ELAC2Q9BQ52 826 aaKnown RBP10.6□□□□□ -0.71
SCN9A-205ENST00000454569 OCSTAMPQ9BR26 566 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 NUSAP1Q9BXS6 441 aaKnown RBP10.6□□□□□ -0.71
SCN9A-205ENST00000454569 TUBB1Q9H4B7 451 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 SYNPO2LQ9H987 977 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 LNPEPQ9UIQ6 1025 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 HAO1Q9UJM8 370 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 RAB23Q9ULC3 237 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 RAP2CQ9Y3L5 183 aa10.6□□□□□ -0.71
SCN9A-205ENST00000454569 ZFHX2Q9C0A1 2572 aaPredicted RBP10.59□□□□□ -0.71
SCN9A-205ENST00000454569 KIF26BQ2KJY2 2108 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 RIF1Q5UIP0 2472 aaKnown RBP10.59□□□□□ -0.71
SCN9A-205ENST00000454569 COL27A1Q8IZC6 1860 aaPredicted RBP10.59□□□□□ -0.71
SCN9A-205ENST00000454569 DMXL1Q9Y485 3027 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 KCNE1BA0A087WTH5 132 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 PABPN1LA6NDY0 278 aaKnown RBP10.59□□□□□ -0.71
SCN9A-205ENST00000454569 DLL1O00548 723 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 B4GAT1O43505 415 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 PRAMEF10O60809 474 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 WFS1O76024 890 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 RETP07949 1114 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 EPB42P16452 691 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 DPP6P42658 865 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 CCT8P50990 548 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 CFHR1Q03591 330 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 CHIT1Q13231 466 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 DOC2AQ14183 400 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 ARHGAP19Q14CB8 494 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 PLCL1Q15111 1095 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 PRAMEF13Q5VWM6 474 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 NKAIN2Q5VXU1 208 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 KIAA1614Q5VZ46 1190 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 CAPN13Q6MZZ7 669 aaPredicted RBP10.59□□□□□ -0.71
SCN9A-205ENST00000454569 SLCO4C1Q6ZQN7 724 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 RABEPKQ7Z6M1 372 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 TRIM73Q86UV7 250 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 WDR75Q8IWA0 830 aaKnown RBP10.59□□□□□ -0.71
SCN9A-205ENST00000454569 SDR16C5Q8N3Y7 309 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 CDYL2Q8N8U2 506 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 OR4C6Q8NH72 309 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 OR10G6Q8NH81 332 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 HMGCLL1Q8TB92 370 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms