RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 GNPTGQ9UJJ9 305 aa7.45□□□□□ -1.22
VPS50-204ENST00000438395 PACSIN2Q9UNF0 486 aaPredicted RBP7.45□□□□□ -1.22
VPS50-204ENST00000438395 SLC5A6Q9Y289 635 aa7.45□□□□□ -1.22
VPS50-204ENST00000438395 R3HDM2Q9Y2K5 976 aaKnown RBP7.45□□□□□ -1.22
VPS50-204ENST00000438395 KLHL20Q9Y2M5 609 aa7.45□□□□□ -1.22
VPS50-204ENST00000438395 AP3B1O00203 1094 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 GNB5O14775 395 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 RASGRF2O14827 1237 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 DSCR3O14972 297 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 PRPF4O43172 522 aaKnown RBP eCLIP7.44□□□□□ -1.22
VPS50-204ENST00000438395 ALBP02768 609 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 UMODP07911 640 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 SPTBP11277 2137 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 ACPPP15309 386 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 CCR7P32248 378 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 CCNFP41002 786 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 CARSP49589 748 aaKnown RBP7.44□□□□□ -1.22
VPS50-204ENST00000438395 SESN2P58004 480 aaPredicted RBP7.44□□□□□ -1.22
VPS50-204ENST00000438395 VSX2P58304 361 aaPredicted RBP7.44□□□□□ -1.22
VPS50-204ENST00000438395 CDC16Q13042 620 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 KLF1Q13351 362 aaPredicted RBP7.44□□□□□ -1.22
VPS50-204ENST00000438395 SNX1Q13596 522 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 FAM214AQ32MH5 1076 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 TUBB8Q3ZCM7 444 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 PLEKHN1Q494U1 663 aaPredicted RBP7.44□□□□□ -1.22
VPS50-204ENST00000438395 PRAMEF13Q5VWM6 474 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 HIST2H2BCQ6DN03 193 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 FIGLAQ6QHK4 219 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 FAM180AQ6UWF9 173 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 IGFL3Q6UXB1 125 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 RAD9BQ6WBX8 426 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 MICALCLQ6ZW33 695 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 GSTA5Q7RTV2 222 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 OVCH1Q7RTY7 1134 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 SDCCAG8Q86SQ7 713 aaPredicted RBP7.44□□□□□ -1.22
VPS50-204ENST00000438395 LRRC6Q86X45 466 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 FAM20CQ8IXL6 584 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 MPP5Q8N3R9 675 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 DNAJC22Q8N4W6 341 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 OR13J1Q8NGT2 312 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 OR2L8Q8NGY9 312 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 MAGEC3Q8TD91 643 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 PPP4R1Q8TF05 950 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 UBE2Q2Q8WVN8 375 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 PEX13Q92968 403 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 RAD51AP1Q96B01 352 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 C19orf60Q96EN9 201 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 IL17FQ96PD4 163 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 RANBP9Q96S59 729 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 CRB3Q9BUF7 120 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 TSGA10Q9BZW7 698 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 SEMA3GQ9NS98 782 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 PAK5Q9P286 719 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 SLC2A6Q9UGQ3 507 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 RIMKLBQ9ULI2 386 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 TTC7AQ9ULT0 858 aaPredicted RBP7.44□□□□□ -1.22
VPS50-204ENST00000438395 TCAF1Q9Y4C2 921 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 CNTRLQ7Z7A1 2325 aa7.44□□□□□ -1.22
VPS50-204ENST00000438395 ITPR2Q14571 2701 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 TCRBV7S2A1N4TA0A589 114 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 ENO4A6NNW6 628 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 MAP2K7O14733 419 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 CD3EAPO15446 510 aaKnown RBP7.43□□□□□ -1.22
VPS50-204ENST00000438395 HCRTR1O43613 425 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 LIASO43766 372 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 VPS26AO75436 327 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 USP1O94782 785 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 SUN1O94901 812 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 EIF2S1P05198 315 aaKnown RBP7.43□□□□□ -1.22
VPS50-204ENST00000438395 FBLP22087 321 aaKnown RBP7.43□□□□□ -1.22
VPS50-204ENST00000438395 CXCR2P25025 360 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 PSMA3P25788 255 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 CMPK1P30085 196 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 PEBP1P30086 187 aaKnown RBP7.43□□□□□ -1.22
VPS50-204ENST00000438395 GRIA3P42263 894 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 GABRA4P48169 554 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 EIF3BP55884 814 aaKnown RBP7.43□□□□□ -1.22
VPS50-204ENST00000438395 BASP1P80723 227 aaKnown RBP7.43□□□□□ -1.22
VPS50-204ENST00000438395 TSTA3Q13630 321 aaPredicted RBP7.43□□□□□ -1.22
VPS50-204ENST00000438395 ZNF169Q14929 603 aaPredicted RBP7.43□□□□□ -1.22
VPS50-204ENST00000438395 MUM1Q2TAK8 710 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 PCID2Q5JVF3 399 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 RNF187Q5TA31 235 aaPredicted RBP7.43□□□□□ -1.22
VPS50-204ENST00000438395 MRNIPQ6NTE8 343 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 CNSTQ6PJW8 725 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 SHISA6Q6ZSJ9 500 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 C8orf86Q6ZUL3 223 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 LURAP1LQ8IV03 231 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 PRSS58Q8IYP2 241 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 KRT222Q8N1A0 295 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 METTL27Q8N6F8 245 aaPredicted RBP7.43□□□□□ -1.22
VPS50-204ENST00000438395 LINC01555Q8NAE3 123 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 FLVCR1-AS1Q8TAF5 88 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 DNAJB14Q8TBM8 379 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 MIEF2Q96C03 454 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 MAGEB10Q96LZ2 347 aaPredicted RBP7.43□□□□□ -1.22
VPS50-204ENST00000438395 MIPEPQ99797 713 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 DESI2Q9BSY9 194 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 YIPF2Q9BWQ6 316 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 CARD6Q9BX69 1037 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms