RNA–Protein interactions for RNA: ENST00000424674.1

SF3B1-205, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 723 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-205ENST00000424674 MOB3CQ70IA8 216 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 TUBA1AQ71U36 451 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 TRILQ7L0X0 811 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 TRMT10CQ7L0Y3 403 aaKnown RBP3.58□□□□□ -1.84
SF3B1-205ENST00000424674 NEK8Q86SG6 692 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 AQP12AQ8IXF9 295 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 C12orf56Q8IXR9 622 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 CFAP52Q8N1V2 620 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 TMEM132CQ8N3T6 1108 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 FBXO39Q8N4B4 442 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 AMER3Q8N944 861 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 Q8NA96 180 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 SRFBP1Q8NEF9 429 aaKnown RBP3.58□□□□□ -1.84
SF3B1-205ENST00000424674 PDCD6IPQ8WUM4 868 aaKnown RBP3.58□□□□□ -1.84
SF3B1-205ENST00000424674 OSCP1Q8WVF1 389 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 OR1E3Q8WZA6 343 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 ESAMQ96AP7 390 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 MSI2Q96DH6 328 aaKnown RBP3.58□□□□□ -1.84
SF3B1-205ENST00000424674 HARBI1Q96MB7 349 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 MUS81Q96NY9 551 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 TRNT1Q96Q11 434 aaKnown RBP3.58□□□□□ -1.84
SF3B1-205ENST00000424674 PANX2Q96RD6 677 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 TMEM47Q9BQJ4 181 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 LLPHQ9BRT6 129 aaKnown RBP3.58□□□□□ -1.84
SF3B1-205ENST00000424674 GON7Q9BXV9 100 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 HDHD5Q9BXW7 423 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 CADM1Q9BY67 442 aaKnown RBP3.58□□□□□ -1.84
SF3B1-205ENST00000424674 CDCP1Q9H5V8 836 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 AUNIPQ9H7T9 357 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 WDR76Q9H967 626 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 NEK6Q9HC98 313 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 ZCCHC3Q9NUD5 404 aaKnown RBP3.58□□□□□ -1.84
SF3B1-205ENST00000424674 GTSE1Q9NYZ3 720 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 EMC3Q9P0I2 261 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 VPS54Q9P1Q0 977 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 STX18Q9P2W9 335 aaKnown RBP3.58□□□□□ -1.84
SF3B1-205ENST00000424674 ATXN10Q9UBB4 475 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 HSFX1Q9UBD0 423 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 RHCGQ9UBD6 479 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 UPB1Q9UBR1 384 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 PLCL2Q9UPR0 1127 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 ENTPD4Q9Y227 616 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 TNFRSF18Q9Y5U5 241 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 COX11Q9Y6N1 276 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 MAST3O60307 1309 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 SPATA31A6Q5VVP1 1343 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 ZNF541Q9H0D2 1346 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 PARD3Q8TEW0 1356 aa3.58□□□□□ -1.84
SF3B1-205ENST00000424674 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.57□□□□□ -1.84
SF3B1-205ENST00000424674 A0A0J9YYE9 177 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 CCDC195A0A1B0GUA6 201 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 C17orf102A2RUQ5 167 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 MAGEA13PA6NCF6 341 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 TMEM247A6NEH6 219 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 C17orf100A8MU93 164 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 SUPT3HB4E1H0 165 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 E7ENX8 843 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 UBE2Q2LH0YL09 131 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 PSMD11O00231 422 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 HIP1O00291 1037 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 LSM1O15116 133 aaKnown RBP3.57□□□□□ -1.84
SF3B1-205ENST00000424674 ARHGEF9O43307 516 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 PPIP5K2O43314 1243 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 ZNF208O43345 1280 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 ECE2O60344 883 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 SNNO75324 88 aaPredicted RBP3.57□□□□□ -1.84
SF3B1-205ENST00000424674 SF3B1O75533 1304 aaKnown RBP eCLIP3.57□□□□□ -1.844e-7■■■■■ 86.2
SF3B1-205ENST00000424674 TJP3O95049 919 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 NDUFB10O96000 172 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 LDLRP01130 860 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 TRBC1P01850 177 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 HMBSP08397 361 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 CYP11B2P19099 503 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 CYP2B6P20813 491 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 GCSHP23434 173 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 MARCKSP29966 332 aaPredicted RBP3.57□□□□□ -1.84
SF3B1-205ENST00000424674 PTGER1P34995 402 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 CHI3L1P36222 383 aaPredicted RBP3.57□□□□□ -1.84
SF3B1-205ENST00000424674 SPAM1P38567 509 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 MPLP40238 635 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 PRCPP42785 496 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 ALDH3B1P43353 468 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 FMO5P49326 533 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 NUMBP49757 651 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 ASCL1P50553 236 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 CRYBB1P53674 252 aaPredicted RBP3.57□□□□□ -1.84
SF3B1-205ENST00000424674 CLDN8P56748 225 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 EEFSECP57772 596 aaKnown RBP3.57□□□□□ -1.84
SF3B1-205ENST00000424674 YWHAGP61981 247 aaKnown RBP eCLIP3.57□□□□□ -1.84
SF3B1-205ENST00000424674 CXADRP78310 365 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 TRAP1Q12931 704 aaKnown RBP3.57□□□□□ -1.84
SF3B1-205ENST00000424674 PRKAA1Q13131 559 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 ZNF177Q13360 481 aaPredicted RBP3.57□□□□□ -1.84
SF3B1-205ENST00000424674 PDIA5Q14554 519 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 EXOC3L2Q2M3D2 409 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 ATP13A5Q4VNC0 1218 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 TBC1D9BQ66K14 1250 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 LRRC8BQ6P9F7 803 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 TEX38Q6PEX7 206 aa3.57□□□□□ -1.84
SF3B1-205ENST00000424674 SLC30A10Q6XR72 485 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms