RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PDYNP01213 254 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 CYP4B1P13584 511 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 IST1P53990 364 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 MRPS10P82664 201 aaKnown RBP5.96□□□□□ -1.46
SCN1A-203ENST00000409050 TAF10Q12962 218 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 ZNF169Q14929 603 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-203ENST00000409050 TRAM2Q15035 370 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 PLEKHS1Q5SXH7 462 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 SH3PXD2AQ5TCZ1 1133 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 RNF220Q5VTB9 566 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 GLT8D1Q68CQ7 371 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 ZNF767PQ75MW2 155 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 LGI4Q8N135 537 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 OR10A6Q8NH74 314 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 LCN9Q8WX39 176 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 RANBP9Q96S59 729 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 PHB2Q99623 299 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 CORO1BQ9BR76 489 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 C7orf50Q9BRJ6 194 aaKnown RBP5.96□□□□□ -1.46
SCN1A-203ENST00000409050 MECRQ9BV79 373 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 POTEKPQ9BYX7 375 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 FZD8Q9H461 694 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 PDZD7Q9H5P4 517 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 DDX4Q9NQI0 724 aaKnown RBP5.96□□□□□ -1.46
SCN1A-203ENST00000409050 NUDT15Q9NV35 164 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 TMEM59LQ9UK28 342 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 SETD1AO15047 1707 aaKnown RBP5.96□□□□□ -1.46
SCN1A-203ENST00000409050 SLIT2O94813 1529 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 FAAHO00519 579 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 ATP6AP2O75787 350 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 OR4F21O95013 312 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 MMP3P08254 477 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 PGAM2P15259 253 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 HTR1EP28566 365 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 LCN1P31025 176 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 SOX10P56693 466 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 GSCP56915 257 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-203ENST00000409050 CNTN2Q02246 1040 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 GALNT1Q10472 559 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-203ENST00000409050 ATP6AP1Q15904 470 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 HSDL1Q3SXM5 330 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 NOL9Q5SY16 702 aaKnown RBP5.96□□□□□ -1.46
SCN1A-203ENST00000409050 ZSWIM9Q86XI8 627 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 SLC15A3Q8IY34 581 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 ZNF781Q8N8C0 355 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 VANGL1Q8TAA9 524 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-203ENST00000409050 SLC7A13Q8TCU3 470 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 TRUB1Q8WWH5 349 aaKnown RBP5.96□□□□□ -1.46
SCN1A-203ENST00000409050 SLC9A6Q92581 669 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 METTL2AQ96IZ6 378 aaKnown RBP5.96□□□□□ -1.46
SCN1A-203ENST00000409050 TM6SF2Q9BZW4 377 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 PLCL2Q9UPR0 1127 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 MED31Q9Y3C7 131 aa5.96□□□□□ -1.46
SCN1A-203ENST00000409050 NAP1L6A6NFF2 107 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 FFAR2O15552 330 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 TREHO43280 583 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 MATN4O95460 622 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 HK1P19367 917 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 GSTM2P28161 218 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 GABRR2P28476 465 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 GRK5P34947 590 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 CTNNB1P35222 781 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 MAGEA8P43361 318 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 AQP4P55087 323 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 GNG2P59768 71 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 IRF5Q13568 498 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 DSC3Q14574 896 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 CLCA4Q14CN2 919 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 TLR1Q15399 786 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 CARD16Q5EG05 197 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 FRG2Q64ET8 278 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 RHBDF2Q6PJF5 856 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 ZNF782Q6ZMW2 699 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-203ENST00000409050 GPAT4Q86UL3 456 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 PDSS2Q86YH6 399 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 RGL4Q8IZJ4 473 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 ZNF676Q8N7Q3 588 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 OR10H4Q8NGA5 316 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 RHEBL1Q8TAI7 183 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 KIAA1191Q96A73 305 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 CHFRQ96EP1 664 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 TBATAQ96M53 351 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 FRG2BQ96QU4 278 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 ASPNQ9BXN1 380 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 CFAP97Q9P2B7 532 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 NUP50Q9UKX7 468 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 RIMKLBQ9ULI2 386 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 CLIC1O00299 241 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 IFNA2P01563 188 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 RYKP34925 604 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 RFC2P35250 354 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 MAGEA11P43364 429 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 MASP1P48740 699 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 TARDBPQ13148 414 aaKnown RBP eCLIP5.95□□□□□ -1.46
SCN1A-203ENST00000409050 SERINC3Q13530 473 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 RAPSNQ13702 412 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 OCLNQ16625 522 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 DET1Q7L5Y6 550 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 C12orf40Q86WS4 652 aa5.95□□□□□ -1.46
SCN1A-203ENST00000409050 MARVELD2Q8N4S9 558 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms